View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12290_low_2 (Length: 640)
Name: NF12290_low_2
Description: NF12290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12290_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 454 - 626
Target Start/End: Original strand, 9027187 - 9027354
Alignment:
| Q |
454 |
gagggaccatatcatattatatgattagccatacatttgcaaaacatgaagtagtgataaaatgtatatagattaattaaacaatgtatgtctttatcaa |
553 |
Q |
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| T |
9027187 |
gagggaccatatcatattatatgattagccatacatttgcaaaacatgaaatagtgataaaatgtatatagattaattaaacaatgtatgtctttatcaa |
9027286 |
T |
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| Q |
554 |
aacaaagacaaattaaagttgtcgagatttgtttgttttttacctttatgagcgtgcttcctctttttctcac |
626 |
Q |
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| T |
9027287 |
aacaaagac-----aaagttgtcgagatttgtttgttttttacctttatgagcgtgcttcctctttttctcac |
9027354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 190 - 348
Target Start/End: Original strand, 9026924 - 9027085
Alignment:
| Q |
190 |
cattggaacttagttttaggtggatatggggttttctgataatgatatatagaaatgagtggattaaaatgtagaaacgtattattaggtttatgtttgt |
289 |
Q |
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| T |
9026924 |
cattggaacttagttttaggtggatatggggttttctgataatgatatatagaaatgagtggattaaaatgtagaaacgtattattaggtttatgtttgt |
9027023 |
T |
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| Q |
290 |
aatt---ataatcacagaaaaaagatagggggtatacatcgaatttccatgtgctgataaag |
348 |
Q |
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| T |
9027024 |
aattataataatcacagaaaaaagatagggggtatacatcgaatttccatgtgctgataaag |
9027085 |
T |
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