View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12290_low_4 (Length: 374)
Name: NF12290_low_4
Description: NF12290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12290_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 51386465 - 51386127
Alignment:
| Q |
19 |
ctgtggagctttcgatcaagacgttctcgcccatagagaattctcagccacactgtggattggtgaggttttactatccaatcaatgtatgctttagttt |
118 |
Q |
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| T |
51386465 |
ctgtggagctttcgatcaagacgttctcgcccatagagaattctcagccatactgtggattggtgaggttttactatccaatcaatgtatgctttagttt |
51386366 |
T |
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| Q |
119 |
tttagtgtatannnnnnnnnnnggaaggttttaaaatttatttttgatattgttgtgtggattatggttgtgggtgattattgctaaagtaacagttttc |
218 |
Q |
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| T |
51386365 |
tttagtgcatatttttttttttggaaggttttaaaatttatttttgatattgt---gaggattatggttgtgggtgattattgctaaagtaacagttttc |
51386269 |
T |
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| Q |
219 |
atggtcgtggttgtcgaattttgannnnnnnaatatttgagtttggtggatttgaaatggttgtgagtactatgtgtttgtgaaaatttttgaatgagca |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51386268 |
atggtcgtggttgtcgaattttgatttttttaatatttgagtttggtggatttgaaatggttgtgagtactatgtgtttgtgaaaatttttgaatgagca |
51386169 |
T |
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| Q |
319 |
aagagagaaataattgcaatattttagagaggggtgcttttt |
360 |
Q |
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| T |
51386168 |
aagagagaaataattgcaatattttagagaggggtgcttttt |
51386127 |
T |
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