View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12290_low_7 (Length: 263)
Name: NF12290_low_7
Description: NF12290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12290_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 35808525 - 35808758
Alignment:
| Q |
20 |
aaaaactcaggaaaaggtggcaaactaacatttgaattcatcatatcattggaaaaagaagaagtaggagtagcagcagccgcagcgcaacgagccagac |
119 |
Q |
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| T |
35808525 |
aaaaactcaggaaaaggtggcaaactaacatttgaattcatcatatcattggaaaaagaagaagtaggagtagcagcagccgcagcgcaacgagccaggc |
35808624 |
T |
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| Q |
120 |
gatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggtctctaagccttgc |
219 |
Q |
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| T |
35808625 |
gatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggtctctaagccttgc |
35808724 |
T |
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| Q |
220 |
atcagcttcataagccaaagaattcacaggttct |
253 |
Q |
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| T |
35808725 |
atcagcttcataagccaaagaattcacagtttct |
35808758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 246
Target Start/End: Original strand, 32036245 - 32036384
Alignment:
| Q |
107 |
caacgagccagacgatcctttgcaatggcaagatcatgttgaagttcaaccatcttcctttgcaaaagtgctatagcacctatgcatccatagacagggt |
206 |
Q |
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|||||||| ||||| ||||| |||||||| | |||||| |||||||| | ||||||||||||||| | ||||| | ||| |||||||| || || |||| |
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| T |
32036245 |
caacgagcaagacgttccttagcaatggccaaatcatgctgaagttccatcatcttcctttgcaacatagctatggaaccaatgcatccgtaaactgggt |
32036344 |
T |
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| Q |
207 |
ctctaagccttgcatcagcttcataagccaaagaattcac |
246 |
Q |
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| T |
32036345 |
ctctaagccttgcttcagcttcataagcaagagaattcac |
32036384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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