View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12291_high_1_N (Length: 528)
Name: NF12291_high_1_N
Description: NF12291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12291_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 48735446 - 48734930
Alignment:
| Q |
1 |
gctacttccaaaggggattgaccggcaaggctgagtaaagcgtcatagagtgccagccgctggaatgtcggctctcaggtgtggtactatgataggtagt |
100 |
Q |
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| T |
48735446 |
gctacttcctaaggggattgaccggcaaggctgagtaaagcgtca--gagtgccagccgctggaatgtcggctctcaggcgtggtactatgataggtagt |
48735349 |
T |
|
| Q |
101 |
tgggtgttacagggtgtccacatcccacatcaatgtttgatggattatttaagcgacttggattttt-ccccttgatagctatgtataagggaaggttcc |
199 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |
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| T |
48735348 |
tgggtgttacggggtgtccacatcccacatctatgtttgatggattatttaagcgacttggtttttttccccttgatagctatgtataagggagggttcc |
48735249 |
T |
|
| Q |
200 |
ccatgctcttggatactcatcagaattgtagtaatcatgggttactaactgatctaatatatccaaattttgttactgtagaggacagaagtatgttaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
48735248 |
ccatgctcttggatactcatcagaattgtagtaatcatgggttactaactgatctaatatatccaaattttgttactgcagaagacagaagtatgttaaa |
48735149 |
T |
|
| Q |
300 |
ttttannnnnnnngcattgtaaatagtatttccttttagctaatcatgtttcttttctcagatctcatgtgttggcggttttggctccaactcttccatg |
399 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48735148 |
ttttattttttttgcattgtaaatagtatttccttttagctaatcatgtttcttttctcagatctcatgtgttggcggttttggctccaactcttccatg |
48735049 |
T |
|
| Q |
400 |
tacaaaattaatggaactgctaacatcaatgcaattagagcagcttcagagcaaggtaaatgaggaatttgcacatttcttatttgctatctactttttc |
499 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48735048 |
tacaaaattaatggaactgccaacatcaatgcaattagagcagcttcagagcaaggtaaacgaggaatttgcacatttcttatttgctatctactttttc |
48734949 |
T |
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| Q |
500 |
agttcctaccctccctatg |
518 |
Q |
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|||||||| ||||| |||| |
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| T |
48734948 |
agttcctatcctccttatg |
48734930 |
T |
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