View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12291_high_2 (Length: 455)

Name: NF12291_high_2
Description: NF12291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12291_high_2
NF12291_high_2
[»] chr5 (7 HSPs)
chr5 (1-447)||(10045726-10046172)
chr5 (198-398)||(39675782-39675982)
chr5 (198-389)||(10866218-10866409)
chr5 (198-389)||(10873896-10874087)
chr5 (198-389)||(10878967-10879158)
chr5 (198-389)||(10884038-10884229)
chr5 (205-398)||(10887972-10888165)
[»] chr8 (1 HSPs)
chr8 (310-380)||(30710110-30710180)


Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 10046172 - 10045726
Alignment:
Q  1 gttacaaccgcacggacaacctcgtcatcttccatggaaagtagcaccggtgccggcaaattcgccggaacaactttttctacggggattttcggaggta 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  10046172 gttaccaccgcacggacaacctcgtcatcttccatggaaagtagcaccggtgccggcaaattcgccggaacaactttttcaacggggattctcggaggta 10046073  T
Q  101 gcttctgtgcgactccggcgaggcatgaaccggagtttttcgcaatgtcggattcatcttcttcgtcgtattgaacagcgcgagaagcggcgaaaggatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046072 gcttctgtgcgactccggcgaggcatgaaccggagtttttcgcaatgtcggattcatcttcttcgtcgtattgaacagcgcgagaagcggcgaaaggatg 10045973  T
Q  201 aagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10045972 aagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggt 10045873  T
Q  301 gtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagtagagtgaagatt 400  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10045872 gtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaagatt 10045773  T
Q  401 gtgactgtgaatcaagcttttggttctttgtttttgaatattcttcg 447  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  10045772 gtgactgtgaatcaagcttttggttctttgtttttgaatatttttcg 10045726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 198 - 398
Target Start/End: Complemental strand, 39675982 - 39675782
Alignment:
Q  198 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 297  Q
    |||||| |||||| ||| ||| ||||||||| ||||||| |||| | |||| ||||||||||| | | |   |||||| ||||||||||| ||||| |||    
T  39675982 atgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga 39675883  T
Q  298 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagtagagtgaag 397  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||| || ||||| |||||||| |||||||||||||  | |||||||||||| |||||||    
T  39675882 ggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaag 39675783  T
Q  398 a 398  Q
    |    
T  39675782 a 39675782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 198 - 389
Target Start/End: Complemental strand, 10866409 - 10866218
Alignment:
Q  198 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 297  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||||||| ||||||||||||| | ||  |||||||||||||||||| || || |||    
T  10866409 atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga 10866310  T
Q  298 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagta 389  Q
    ||||| |||||||||||||| |||||||||| ||  |||||||| || ||||| |||||||| ||||| ||||||||  | |||||||||||    
T  10866309 ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta 10866218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 198 - 389
Target Start/End: Original strand, 10873896 - 10874087
Alignment:
Q  198 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 297  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||||||| ||||||||||||| | ||  |||||||||||||||||| || || |||    
T  10873896 atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga 10873995  T
Q  298 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagta 389  Q
    ||||| |||||||||||||| |||||||||| ||  |||||||| || ||||| |||||||| ||||| ||||||||  | |||||||||||    
T  10873996 ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta 10874087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 198 - 389
Target Start/End: Original strand, 10878967 - 10879158
Alignment:
Q  198 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 297  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||||||| ||||||||||||| | ||  |||||||||||||||||| || || |||    
T  10878967 atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga 10879066  T
Q  298 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagta 389  Q
    ||||| |||||||||||||| |||||||||| ||  |||||||| || ||||| |||||||| ||||| ||||||||  | |||||||||||    
T  10879067 ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta 10879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 198 - 389
Target Start/End: Original strand, 10884038 - 10884229
Alignment:
Q  198 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 297  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||||||| ||||||||||||| | ||  |||||||||||||||||| || || |||    
T  10884038 atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga 10884137  T
Q  298 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagta 389  Q
    ||||| |||||||||||||| |||||||||| ||  |||||||| || ||||| |||||||| ||||| ||||||||  | |||||||||||    
T  10884138 ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta 10884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 205 - 398
Target Start/End: Original strand, 10887972 - 10888165
Alignment:
Q  205 atgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtgg 304  Q
    |||||| || ||||||||||||| |||||||| |  |||||||| ||||||||||| ||| |  |||||||||||| |||||| |  || |||||||| |    
T  10887972 atgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgtag 10888071  T
Q  305 aggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagtagagtgaaga 398  Q
    ||||||||||||| |||||||||| || ||||||||| |||||| | |||||||| ||||| |||||||| ||||||||||| || ||||||||    
T  10888072 aggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaaga 10888165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 30710110 - 30710180
Alignment:
Q  310 cggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtt 380  Q
    ||||||||||||||||| ||||| || || ||||||||||| |||||||||| |||||||||||| |||||    
T  30710110 cggatcttctcacgccaacggtggaggaggaaatacgcgacggagaagaaaacaccgaagaaaacagcgtt 30710180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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