View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12291_high_3 (Length: 410)
Name: NF12291_high_3
Description: NF12291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12291_high_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 41 - 410
Target Start/End: Complemental strand, 5052371 - 5052003
Alignment:
| Q |
41 |
tgaagggcatccctgttatatcaccgtgcaaatttgatattaactactatatttgaaatccatattgtatattataatcaannnnnnnaacattgactag |
140 |
Q |
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| T |
5052371 |
tgaagggcatccctgttatagcaccgtgcaaatttgatattaactactatatttgaaagccatattgtatattataatcaaattttttaacattgactag |
5052272 |
T |
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| Q |
141 |
ttaagtcaatgcaaaacattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtactattgtcttcaat |
240 |
Q |
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| T |
5052271 |
ttaagtcaatgcaaagcattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatctgaaaccaaggtactattgtcttaaat |
5052172 |
T |
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| Q |
241 |
gttcactgaatattccaatccaaactcacattcctgtaaacgccttcttggcaatgtcaatactttgaacctcactatctttaagagtggcctatgaaca |
340 |
Q |
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| T |
5052171 |
gttcactgaat-ttccaatccaaactcacattcctgtaaacgccttcttggcaatgtcaatacattgaacctcactgtctttgagagtggcctatgaaca |
5052073 |
T |
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| Q |
341 |
tggcagtaagtaaagggaatgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctca |
410 |
Q |
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| T |
5052072 |
tggcagtaagtaaagggaatgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctca |
5052003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 5048273 - 5048194
Alignment:
| Q |
148 |
aatgcaaaacattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtac |
227 |
Q |
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| T |
5048273 |
aatgcaaagcattaaaacatatccaaatttgatgagatcatgaccaagtcagaacagtcaaacatttgaaactaaggtac |
5048194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 5048569 - 5048513
Alignment:
| Q |
28 |
cacatcacagaagtgaagggcatccctgttatatcaccgtgcaaatttgatattaact |
85 |
Q |
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| T |
5048569 |
cacatcacaaaagtgaagggcatccctatt-taggaccgtgcaaatttgatattaact |
5048513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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