View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12291_high_4 (Length: 357)

Name: NF12291_high_4
Description: NF12291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12291_high_4
NF12291_high_4
[»] chr1 (1 HSPs)
chr1 (1-340)||(51386128-51386465)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 51386128 - 51386465
Alignment:
Q  1 aaaagcacccctctctaaaatattgcaattatttctctctttgctcattcaaaaattttcacaaacacatagtactcacaaccatttcaaatccaccaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386128 aaaagcacccctctctaaaatattgcaattatttctctctttgctcattcaaaaattttcacaaacacatagtactcacaaccatttcaaatccaccaaa 51386227  T
Q  101 ctcaaatattnnnnnnntcaaaattcgacaaccacgaccatgaaaactgttactttagcaataatcacccacaaccataatccacacaacaatatcaaaa 200  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||    
T  51386228 ctcaaatattaaaaaaatcaaaattcgacaaccacgaccatgaaaactgttactttagcaataatcacccacaaccataatcctc---acaatatcaaaa 51386324  T
Q  201 ataaattttaaaaccttcc-nnnnnnnnnntatacactaaaaaactaaagcatacattgattggatagtaaaacctcaccaatccacagtgtggctgaga 299  Q
    |||||||||||||||||||           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51386325 ataaattttaaaaccttccaaaaaaaaaaatatgcactaaaaaactaaagcatacattgattggatagtaaaacctcaccaatccacagtatggctgaga 51386424  T
Q  300 attctctatgggcgagaacgtcttgatcgaaagctccacag 340  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  51386425 attctctatgggcgagaacgtcttgatcgaaagctccacag 51386465  T

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