View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12291_high_8 (Length: 314)
Name: NF12291_high_8
Description: NF12291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12291_high_8 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 39988000 - 39988298
Alignment:
| Q |
16 |
acctgtgaacaattgttttcatgaaacgttgagttgcattcttttcatctttgttttcttttctgcctctggaaatttggtttcattaactggctgccaa |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39988000 |
acctttgaacaattgttttcatgaaacgttgagttgcattcttttcatctttgttttcttttctgcctctggaaatttggtttcattaactggctgccaa |
39988099 |
T |
|
| Q |
116 |
ctatgacttgttcagtattttgagttggcatgaatggtattagaggcttctttgtgggcacagctatatttttcatacaactttcatttgaaacaggaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39988100 |
ctatgacttgttcagtattttgagttggcaggaatggtattagaggcttctttgtgggcacagctatatttttcatacaactttcatttgaaacaggaga |
39988199 |
T |
|
| Q |
216 |
ggccttctttcctttcaatggccttggaacctccaatctctccaaaatccttgaagtttccttgtctagctgtctaatgccatttcgtggtgatatact |
314 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39988200 |
ggccttctttcctttcgatggccttggaacctccaatctctccaaaatccttgaagtttccttgtctagctgtctaatgccatttcgtggtgatatact |
39988298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University