View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12291_high_9 (Length: 302)
Name: NF12291_high_9
Description: NF12291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12291_high_9 |
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| [»] scaffold1407 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 15932837 - 15933133
Alignment:
| Q |
1 |
tttaagcttttgtttagctatcgtacaattttacaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932837 |
tttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttt |
15932936 |
T |
|
| Q |
101 |
tcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagcctatatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15932937 |
tcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccatgttgctacctaccttgctataactcaagccgtgagtctatatt |
15933036 |
T |
|
| Q |
201 |
gttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccgttcatctcact |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15933037 |
gttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccgttcatttcact |
15933133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 15941179 - 15941475
Alignment:
| Q |
1 |
tttaagcttttgtttagctatcgtacaattttacaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15941179 |
tttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttt |
15941278 |
T |
|
| Q |
101 |
tcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagcctatatt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15941279 |
tcatcattcctttttcattccaacttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctatatt |
15941378 |
T |
|
| Q |
201 |
gttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccgttcatctcact |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15941379 |
gttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccgttcatttcact |
15941475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 34657269 - 34657565
Alignment:
| Q |
1 |
tttaagcttttgtttagctatcgtacaattttacaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
34657269 |
tttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaattgcaattttgaattaagttactatttcaatttctagttcctgttt |
34657368 |
T |
|
| Q |
101 |
tcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagcctatatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
34657369 |
tcatcattcctttttcattccaatttagtttttcttgccgtattttccaattgccgtgttgctacctaccttgctttaactcaagccgtgagtctatatt |
34657468 |
T |
|
| Q |
201 |
gttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccgttcatctcact |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34657469 |
gttgggtggctatttaattgaatttccattgctaagaattcaatagtgctgtgtgtatttcttcaaattcctggctgcaccgtccgttcatttcact |
34657565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 11164275 - 11164571
Alignment:
| Q |
1 |
tttaagcttttgtttagctatcgtacaattttacaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
11164275 |
tttaagcttttgtttagctatcgtacaattttacaatttcagaacctttcttaattgcaattttgaattaagtaactatttcaatttctagttcctgttt |
11164374 |
T |
|
| Q |
101 |
tcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagcctatatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |
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|
| T |
11164375 |
tcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctttaactcaagccatgagtctatatt |
11164474 |
T |
|
| Q |
201 |
gttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccgttcatctcact |
297 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
11164475 |
gttgtgtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccgttcatttcact |
11164571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 1300 - 1239
Alignment:
| Q |
4 |
aagcttttgtttagctatcgtacaatt-ttacaaattcagaacctttgttaattgcaatttt |
64 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
1300 |
aagcttttgtttagctatcatacaattcttacaacttcagaacctttgtgaattgcaatttt |
1239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 32557 - 32609
Alignment:
| Q |
13 |
tttagctatcgtacaatt-ttacaaattcagaacctttgttaattgcaatttt |
64 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| |||||| |||||||||||| |
|
|
| T |
32557 |
tttagctatcgtacaatccttacaacttcagaatctttgtgaattgcaatttt |
32609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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