View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12291_low_2 (Length: 291)
Name: NF12291_low_2
Description: NF12291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12291_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 15266212 - 15265946
Alignment:
| Q |
7 |
attgggtcaaagacactagaggccctttgtacaatgatacaacatgtggcatgatgaaagaaggaagaaattgcatgacacatgggagacctgattctga |
106 |
Q |
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| T |
15266212 |
attgggtcaaagacactagaggccctttgtacaatgatacaacatgtggcatgatgaaagaaggaagaaattgcatgacacatgggagacctgattctga |
15266113 |
T |
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| Q |
107 |
ttatctttattggagatggaaaccaaatgaatgcaaacttccaaggtttgaacctaacacttttctccaactaaataagaacaaacatattgcttttgtt |
206 |
Q |
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| T |
15266112 |
ttatctttattggagatggaaaccaaatgaatgcaaacttccaaggtttgaacctaacacttttctccaacttagtaagaacaaacacattgcttttgtt |
15266013 |
T |
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| Q |
207 |
ggtgattctttagctaggaaccaattagagtctcttctttgtatgttagcaactacttcaattccta |
273 |
Q |
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| T |
15266012 |
ggtgattctttagctaggaaccaattagagtctcttctttgtatgttagcaactacttcaattccta |
15265946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 267
Target Start/End: Complemental strand, 15288293 - 15288104
Alignment:
| Q |
78 |
tgcatgacacatgggagacctgattctgattatctttattggagatggaaaccaaatgaatgcaaacttccaaggtttgaacctaacacttttctccaac |
177 |
Q |
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| T |
15288293 |
tgcatcacaaatggtagacctgatttaggttatctttattggagatggaagccaagtgagtgtaatctaccaaggtttgaaccaaacactttcctcaatc |
15288194 |
T |
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| Q |
178 |
taaataagaacaaacatattgcttttgttggtgattctttagctaggaaccaattagagtctcttctttgtatgttagcaactacttcaa |
267 |
Q |
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| T |
15288193 |
tcattaagaacaaacatatagcttttgttggagattctttggctaggaaccaattagagtcacttctttgcatgttatcgactacttcaa |
15288104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 15257676 - 15257446
Alignment:
| Q |
24 |
agaggccctttgtacaatgatacaacatgtggcatgatgaaagaaggaagaaattgcatgacacatgggagacctgattctgattatctttattggagat |
123 |
Q |
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| T |
15257676 |
agaggacctttatacaatggaacaacatgtggaacaatcaaagaaggacagaattgtatcaaacatggaagaccagattctggttatctatactggagat |
15257577 |
T |
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| Q |
124 |
ggaaaccaaatgaatgcaaacttccaaggtttgaacctaacacttttctccaactaaataagaacaaacatattgcttttgttggtgattctttagctag |
223 |
Q |
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| T |
15257576 |
ggaaaccaagtgaatgtaagcttccaaggtttgagcctaacacttttcttcaattcattgaaaacaaacacatggcttttgttggtgattctatggctag |
15257477 |
T |
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| Q |
224 |
gaaccaattagagtctcttctttgtatgtta |
254 |
Q |
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| T |
15257476 |
gaaccagttagagtcacttctttgtttgtta |
15257446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 15262178 - 15262318
Alignment:
| Q |
120 |
agatggaaaccaaatgaatgcaaacttccaaggtttgaacctaacacttttctccaactaaataagaacaaacatattgcttttgttggtgattctttag |
219 |
Q |
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| T |
15262178 |
agatggaaaccaaatgagtgcaaacttccaaggtttgaaccaaacacttttctccaactaagcaaaaacagacacatatcttttgttggagattctttag |
15262277 |
T |
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| Q |
220 |
ctaggaaccaattagagtctcttctttgtatgttagcaact |
260 |
Q |
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| T |
15262278 |
ctagaaaccaatttgagtctcttctttgcatgttatcaact |
15262318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 15274466 - 15274599
Alignment:
| Q |
114 |
tattggagatggaaaccaaatgaatgcaaacttccaaggtttgaacctaacacttttctccaactaaataagaacaaacatattgcttttgttggtgatt |
213 |
Q |
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| T |
15274466 |
tattggagatggaaaccaaaggagtgtgatcttccaatttttgaaccaaacacttttcttacactcatcaacaacatgaacatagcttttgttggagact |
15274565 |
T |
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| Q |
214 |
ctttagctaggaaccaattagagtctcttctttg |
247 |
Q |
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| T |
15274566 |
ctttagctaggaaccaaatagagtcccttgtttg |
15274599 |
T |
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