View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12292_high_1 (Length: 539)

Name: NF12292_high_1
Description: NF12292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12292_high_1
NF12292_high_1
[»] chr1 (9 HSPs)
chr1 (18-530)||(30620754-30621266)
chr1 (172-499)||(30616034-30616361)
chr1 (206-325)||(16183800-16183919)
chr1 (209-325)||(16175443-16175559)
chr1 (206-325)||(16223190-16223309)
chr1 (206-324)||(33108900-33109018)
chr1 (204-318)||(33114936-33115050)
chr1 (60-105)||(30616942-30616987)
chr1 (233-309)||(9700035-9700111)
[»] chr7 (2 HSPs)
chr7 (203-495)||(38883805-38884097)
chr7 (203-357)||(38892997-38893151)
[»] chr3 (1 HSPs)
chr3 (221-310)||(37316173-37316262)
[»] chr5 (1 HSPs)
chr5 (230-310)||(19207037-19207117)


Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 30621266 - 30620754
Alignment:
Q  18 atgtattacattcattaattaaaatattccatacaccgtttgattgatatgcacattgcacatgttagcatggattcaatgatcttttgtttataaaatt 117  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  30621266 atgtattacattcattaattaaaatattgcatacaccgtttgattgatatgcacattgcacatgttagcatggatttaatgatcttttgtttataaaaat 30621167  T
Q  118 aaggtacgtaatttgttttttaagaggggaatatcattatttacaggcactaggaaaacattgaggcatggctaaggagaatctccaggtgctaaatgca 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30621166 aaggtacgtaatttgttttttaagcggggaatatcattatttacaggcactaggaaaacattgaggcatggctaaggagaatctccaggtgctaaatgca 30621067  T
Q  218 ctagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcatatcccttg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30621066 ctagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcatatcccttg 30620967  T
Q  318 tcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcagcagcagttaatggcgttgcttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30620966 tcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcagcagcagttaatggcgttgcttt 30620867  T
Q  418 tgttgggacactttctggacaactctttttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgactctagctgttatggttgtttgt 517  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30620866 tgttgggacactttctggacaactcttcttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgactctagctgttatggttgtttgt 30620767  T
Q  518 tccacaggttctg 530  Q
    |||| ||||||||    
T  30620766 tccataggttctg 30620754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 172 - 499
Target Start/End: Complemental strand, 30616361 - 30616034
Alignment:
Q  172 aaaacattgaggcatggctaaggagaatctccaggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctgga 271  Q
    |||||||||||||||||| | ||||||||||  |||||||| ||||||||||||||| | ||||||||| |||||||| |||||||||| |||  |||||    
T  30616361 aaaacattgaggcatggcaagggagaatctcagggtgctaagtgcactagatgtagcaagaacacaatgttaccattttacagcaattgccattactgga 30616262  T
Q  272 atgggcttcttcaccgatgcatacgatctattctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccag 371  Q
     |||||||||||||| ||||||| |||||||| |||||||| ||||| |||| |||||||||||| || || ||| ||||||| ||||||||| |||| |    
T  30616261 ctgggcttcttcaccaatgcatatgatctattttgcatatcgcttgttacaaggctactcggtcgtatatattactatgtcgacggagctgaagagcctg 30616162  T
Q  372 gatcgttgccaccaaacgttgcagcagcagttaatggcgttgcttttgttgggacactttctggacaactctttttcggctggctcggtgacaaactagg 471  Q
    || | ||||||||||||||||||||| ||||||| ||| | ||||| ||||| ||| || | ||||||||||| ||||||||||||||||||||||||||    
T  30616161 gaacattgccaccaaacgttgcagcaacagttaacggcctcgctttagttggaacatttaccggacaactcttcttcggctggctcggtgacaaactagg 30616062  T
Q  472 ccgtaaaaaagtctatggcatgactcta 499  Q
    ||||| || ||||||||| || ||||||    
T  30616061 ccgtagaacagtctatggaatcactcta 30616034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 16183800 - 16183919
Alignment:
Q  206 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 305  Q
    ||||| |||||||| ||||| || || || |||| ||||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||| ||||    
T  16183800 gtgcttaatgcactcgatgtcgcaaagacgcaattgtaccatttcactacaattgtgatagctggaatgggattcttcactgatgcatatgatcttttct 16183899  T
Q  306 gcatatcccttgtcacaaag 325  Q
    |||| |||||||||||||||    
T  16183900 gcatttcccttgtcacaaag 16183919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 16175559 - 16175443
Alignment:
Q  209 ctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgca 308  Q
    ||||||||||||||||| || || ||||||| ||||||||||||  ||||||| |||||||||||||| |||||||| ||||| || ||||| |||||||    
T  16175559 ctaaatgcactagatgtggcaaagacacaattgtaccatttcactacaattgtgatagctggaatgggtttcttcactgatgcttatgatcttttctgca 16175460  T
Q  309 tatcccttgtcacaaag 325  Q
    | || ||||| ||||||    
T  16175459 tttctcttgttacaaag 16175443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 16223190 - 16223309
Alignment:
Q  206 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 305  Q
    |||||||||||||| ||||| || || ||||||| ||| || |||||  ||||||| || ||||||||||| |||||||| |||||||| ||||| ||||    
T  16223190 gtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatcttttct 16223289  T
Q  306 gcatatcccttgtcacaaag 325  Q
    |||| |||||||||||||||    
T  16223290 gcatttcccttgtcacaaag 16223309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 324
Target Start/End: Original strand, 33108900 - 33109018
Alignment:
Q  206 gtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattct 305  Q
    ||||| |||||||| ||||| ||||| ||||||  ||||||||||||||||||||| || ||||||||||| || ||||| ||||| || ||||| || |    
T  33108900 gtgcttaatgcactcgatgtggcgaagacacaaatgtaccatttcacagcaattgtgattgctggaatgggttttttcactgatgcctatgatctctttt 33108999  T
Q  306 gcatatcccttgtcacaaa 324  Q
    |||| ||||||||||||||    
T  33109000 gcatttcccttgtcacaaa 33109018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 33114936 - 33115050
Alignment:
Q  204 aggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctatt 303  Q
    ||||||| |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||| || ||||| ||| | || ||||| ||    
T  33114936 aggtgcttaatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctctt 33115035  T
Q  304 ctgcatatcccttgt 318  Q
    |||||| ||||||||    
T  33115036 ctgcatttcccttgt 33115050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 30616987 - 30616942
Alignment:
Q  60 attgatatgcacattgcacatgttagcatggattcaatgatctttt 105  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30616987 attgatatgcacattgcacatattagcatggattcaatgatctttt 30616942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 9700111 - 9700035
Alignment:
Q  233 acacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcat 309  Q
    ||||||||||||||| | ||||| || || || ||||| ||||| |||||||| ||||| || ||||| ||||||||    
T  9700111 acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctgcat 9700035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 203 - 495
Target Start/End: Original strand, 38883805 - 38884097
Alignment:
Q  203 caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctat 302  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||||| |||||  |||||||||| ||||| ||||| || ||||| || ||||| |    
T  38883805 caggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgt 38883904  T
Q  303 tctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcagcagcagt 402  Q
    ||||  |||||||||| |||||| | ||||||||||| |||||||| || ||||| ||||  ||||| ||  | ||||| || || ||  |||| || ||    
T  38883905 tctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgtatcagctgctgt 38884004  T
Q  403 taatggcgttgcttttgttgggacactttctggacaactctttttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgac 495  Q
     ||||| || |||||   ||| |||||||| || ||||| || || |||||||| ||||| ||  | ||| | |||||||||||||| |||||    
T  38884005 gaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgac 38884097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 203 - 357
Target Start/End: Original strand, 38892997 - 38893151
Alignment:
Q  203 caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctat 302  Q
    ||||||||||||||||| ||||| |||||||| |||||||| || |||||||||||  |||| ||||||||||| ||||| || ||||| || ||||| |    
T  38892997 caggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgatctgt 38893096  T
Q  303 tctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatgg 357  Q
    |||||||||||||||| || ||| | || || ||||| || |||||||| |||||    
T  38893097 tctgcatatcccttgttaccaagttgctgggacgcatatattaccatgttgatgg 38893151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 37316262 - 37316173
Alignment:
Q  221 gatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 310  Q
    |||| ||| |||||||||||||||||||||||||| ||  | || ||||| ||||| |||||||| |||||||| || || |||||||||    
T  37316262 gatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgcata 37316173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 19207037 - 19207117
Alignment:
Q  230 aaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctattctgcata 310  Q
    |||||||||||||||| ||||||||| ||  | || ||||| ||||| |||| ||| |||||||| || || |||||||||    
T  19207037 aaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacagatgcatatgaccttttctgcata 19207117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University