View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12292_high_2 (Length: 226)
Name: NF12292_high_2
Description: NF12292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12292_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 52599685 - 52599481
Alignment:
| Q |
1 |
cgcttattacatcatattccaattattacattacattgtatatcatttgattagcaaggtacaaaaatgaaaccttggagttgaagtaatctacgaggca |
100 |
Q |
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| T |
52599685 |
cgcttattacatcatattccaattattacatta--ttgtatatcatttgattagcaaggtacaaaaatgaaaccttggagttgaagtaatctacgaggca |
52599588 |
T |
|
| Q |
101 |
ttgttagaagaatgtattcttgttgaagttgaagttgaagttgagccgtcttggtcggtattgacatagccaaatatgaaggggtgaaattcaacaactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52599587 |
ttgttagaagaatgtattcttgttgaagttgaagttgaagttgagccgtcttggtcggtattgacatagccaaatatgaaggggtgaaattcaacaactg |
52599488 |
T |
|
| Q |
201 |
gcaacag |
207 |
Q |
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||||||| |
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| T |
52599487 |
gcaacag |
52599481 |
T |
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