View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12293_high_2 (Length: 392)
Name: NF12293_high_2
Description: NF12293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12293_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 57 - 370
Target Start/End: Original strand, 49082847 - 49083160
Alignment:
| Q |
57 |
acagattatcatgcctcctcaaaacataacatttccacagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttccgtg |
156 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49082847 |
acagattaccatgcctcctcaaaatataacatttccacagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttctgtg |
49082946 |
T |
|
| Q |
157 |
gcttccacacacaaaaatattgaatgcagtgnnnnnnntagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49082947 |
gcttccacacacaaaaatattgaatgcagtgaaaaaaatagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaat |
49083046 |
T |
|
| Q |
257 |
aggattgttagatatgtcagtttcagactgttagttgtgaaacaacagctaacttttacctcagcggatttcattattaatgttctatttacactttcaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
49083047 |
aggattgttagatatgtcagtttcagactgttagttgtgaaacaacagttaacttttacctcagcggatttcattattaatattctatttacactttcaa |
49083146 |
T |
|
| Q |
357 |
tgtctggcttcggt |
370 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
49083147 |
tgtctggcttcggt |
49083160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University