View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12293_high_4 (Length: 335)
Name: NF12293_high_4
Description: NF12293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12293_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 4 - 328
Target Start/End: Complemental strand, 5053839 - 5053515
Alignment:
| Q |
4 |
caacagtattgccactgtaatataagggattttaaagtctccacaacagtattgcaaccgcaattttgacatcttattcctgcatttttctgcaatataa |
103 |
Q |
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| T |
5053839 |
caacagtattgccactgtaatataagggattttaaagtctccacaacagtattgcaaccgcaattttgacatcttattcccgcatttttctgcaatataa |
5053740 |
T |
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| Q |
104 |
aggtttgcaacataactagaaccactatatataatctatagttggtagtattagttttgtcaccgtcaagggacaatagtagttgtatagttttcagaaa |
203 |
Q |
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| T |
5053739 |
aggtttgcaacgtaactagaaccactatatataatctatagttggtagtattagttttgccaccgtcgagggacaatagtagttgtatagttttcagaaa |
5053640 |
T |
|
| Q |
204 |
ttgattcaaattctgtgatgcaaacaagtgaaatgagcgctttttctgtgctgttgattctactaatcttctgcaattctgggttttgtattgctggtgg |
303 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053639 |
ttgattcaaattctgtgatgctaacaagtgaaatgagcgctttttctgtgctgctgattctactaatcttctgcaattctgggttttgtattgctggtgg |
5053540 |
T |
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| Q |
304 |
tttgttgaatttcacaggttctgct |
328 |
Q |
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|||||||||||||||| |||||||| |
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| T |
5053539 |
tttgttgaatttcacaagttctgct |
5053515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5053885 - 5053828
Alignment:
| Q |
1 |
ccgcaacagtattgccactgtaatataagggattttaaagtctccacaacagtattgc |
58 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| |
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| T |
5053885 |
ccgcaacagtattgccacggtaatataagggattttgaagcctccacaacagtattgc |
5053828 |
T |
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