View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12293_high_5 (Length: 331)
Name: NF12293_high_5
Description: NF12293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12293_high_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 11593648 - 11593501
Alignment:
| Q |
184 |
ggttggattggactgtaaaatattgtttctctatttccaagtccaatcaccatgtttctctatttacattttgacacgaagagtaatacgtgtgcaacag |
283 |
Q |
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| T |
11593648 |
ggttggattggactgtaaaatattgtttctctatttccaagtccaatcaccatgtttctctatttacattttgacacgaagagtaatacgtgtgcaccag |
11593549 |
T |
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| Q |
284 |
tcaaaccctcaccacacgtgtcactatttcattccatttctcaacgcc |
331 |
Q |
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| T |
11593548 |
tcaatccctcaccacacgtgtcactctttcattccatttctcaacgcc |
11593501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 11593781 - 11593633
Alignment:
| Q |
15 |
gttgttgcctattggaactcggtgtaactaattactctagttaaaatgctattgcttgagatcaagaaactatagtttgcagtcaaaaacataatctagg |
114 |
Q |
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| T |
11593781 |
gttgttgcctattggaactcgttgtaaccaattactcaagttcaaatgctattgcttgagatcaagaaactatagtttgcagtcaaaaacataatctagg |
11593682 |
T |
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| Q |
115 |
aacatattcgaacgtgacctgattattagattaggttggattggactgt |
163 |
Q |
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| T |
11593681 |
aacatattcgaacgtgacctgattattagattaggttggattggactgt |
11593633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 11644538 - 11644622
Alignment:
| Q |
247 |
ttacattttgacacgaagagtaatacgtgtgcaacagtcaaaccctcaccacacgtgtcactatttcattccatttctcaacgcc |
331 |
Q |
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| T |
11644538 |
ttacattttgacactaagagtaacacgtgtccaactgtcaaactatcaccacacgtgtcactcttccattccatttcacaacgcc |
11644622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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