View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12293_low_1 (Length: 545)
Name: NF12293_low_1
Description: NF12293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12293_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 998838 - 998303
Alignment:
| Q |
1 |
taagatttaatttagattgtttgccttttcttattcccggtcgcgggnnnnnnnnttcgtcgaaatcgtttcgagtcggagtgaaaaagggatcagatgg |
100 |
Q |
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| T |
998838 |
taagatttaatttagattgtttgccttttcttattcccggtcgcgggaaaaaaaattcgtcgaaatcgtttcgagtcggagtgaaaaagggatcagatgg |
998739 |
T |
|
| Q |
101 |
actaatgaatattggaagatcactcaaaagtggagtcacttggggagtttttccagaagatcttaaagtgtcacagaaaaaagtatttgatcctcaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
998738 |
actaatgaatattggaagatcactcaaaagtggagtcacttggggagtttttccagaagatcttaaagtgtcacagaaaaaagtatttgatcctcaagat |
998639 |
T |
|
| Q |
201 |
aagaatcttctttattggaacaagtttttcgagattctatgcatcctttctgtagcttgtgatcctttcnnnnnnnatcttccttatttcaaccacaaat |
300 |
Q |
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| T |
998638 |
aagaatcttctttattggaacaagtttttcgagattctatgcatcctttctgtagcttgtgatcctttctttttttatcttccttatttcaaccacaaat |
998539 |
T |
|
| Q |
301 |
catattgtttagccatagataacgatctagcgaagtttactgttatattgagaacaatatgtgattttatttatctcattcgcataagtttccaattccg |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
998538 |
catattgtttagccatagataacaatctagcgaagtttactgttatattgagaacaatatgtgattttatttatctcattcgcataagtttccaattccg |
998439 |
T |
|
| Q |
401 |
caccgccttcattgcaccttcatctcgagtatttggaagaggtgaacttgtcatagatcctggattgatcgcaaagcgatatttacaacgctatttcatt |
500 |
Q |
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| T |
998438 |
caccgccttcattgcaccttcatctcgagtatttggaagaggtgaacttgtcatagatcctggattgatcgcaaagcgatatttacaacgctatttcatt |
998339 |
T |
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| Q |
501 |
attgacttctggtctgtgctgccgctgccacaggtt |
536 |
Q |
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| T |
998338 |
attgacttctggtctgtgctgccgctgccacaggtt |
998303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 9549874 - 9549838
Alignment:
| Q |
408 |
ttcattgcaccttcatctcgagtatttggaagaggtg |
444 |
Q |
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|||||||| ||||| |||||||||||||||||||||| |
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| T |
9549874 |
ttcattgctccttcttctcgagtatttggaagaggtg |
9549838 |
T |
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