View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12294_high_1 (Length: 363)
Name: NF12294_high_1
Description: NF12294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12294_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 111 - 295
Target Start/End: Original strand, 30395987 - 30396169
Alignment:
| Q |
111 |
aaaaataatatcaatatgttacattaattattattttttcactattatataagacacaccaccctgaacatactttcattcatactcttcatattacacc |
210 |
Q |
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| T |
30395987 |
aaaaataatatcaaagtgtcacattaattatttttttt--actattatataagacacaccaccctgaacacactttcattcatactctccatattacacc |
30396084 |
T |
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| Q |
211 |
accctaccttacatttcaggttcacctagtttataaccttcattcttttcttctttgtgcaaaataatgcattttcttcttggtc |
295 |
Q |
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| T |
30396085 |
accctaccttacatttcaggttcacctagtttataaccttcattcttttctactttgtacaaaataatgcattttcattttggtc |
30396169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 30395871 - 30395923
Alignment:
| Q |
18 |
ctatccaacttttattctcaacttactcaaataggtcattttatttttatctt |
70 |
Q |
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| T |
30395871 |
ctatccaacttttattctcaacttactcaaagaagtcattttattttcatctt |
30395923 |
T |
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