View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12294_low_2 (Length: 261)
Name: NF12294_low_2
Description: NF12294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12294_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 42416127 - 42416377
Alignment:
| Q |
8 |
gaacctgtgccttccctttatcccgatcgtcgtgattgttattattattcagatgattcggtaagagagtgaaaccaggcggctcttcaggctcattttc |
107 |
Q |
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| T |
42416127 |
gaacctgtgccttccctttatcccgatcgtcgtgattgttat---tattcagatgattcggtaagagagtgaaaccaggcggctcttcaggctcattttc |
42416223 |
T |
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| Q |
108 |
atacaaagtatcatcattctcagtagctgaagctttttcaccttgacactgaattgacattgcatcagatgttgataacagaacctcatctttccctttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42416224 |
atacaaagtatcatcattctcagtagctgaagctgtttcaccttgacactgaattgacattgcatcagatgttgataacagaacctcatctttccctttg |
42416323 |
T |
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| Q |
208 |
gggttcgccagtttatcgtagacagattgcaccgtttccacgatttcacctttc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42416324 |
gggttcgccagtttatcgtagacagattgcaccgtttccacgatttcacctttc |
42416377 |
T |
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