View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12294_low_4 (Length: 253)
Name: NF12294_low_4
Description: NF12294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12294_low_4 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 25226801 - 25226883
Alignment:
| Q |
154 |
catgcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt |
236 |
Q |
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| T |
25226801 |
catgcttgggaacgctgtaaccatttggtacactcttggattatcaattctgttactgatttaattgctcagactatagtatt |
25226883 |
T |
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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 25226707 - 25226774
Alignment:
| Q |
90 |
gagcggatcaatgtagcgtgctttgggagctaaaaacaagcttcccttcatcaatggaaacttacatg |
157 |
Q |
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| T |
25226707 |
gagcggatcaatgtagcgtgctttgggagctaaaaacaagcttcccttcatcaatggaaacttacatg |
25226774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25226361 - 25226417
Alignment:
| Q |
1 |
atgagagagttagttacgatccataattgtttctgtcattgatgcttgttcttcaag |
57 |
Q |
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| T |
25226361 |
atgagagagttagttacgatccataattgtttctgtcattgatgcttgttcttcaag |
25226417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 22178805 - 22178726
Alignment:
| Q |
157 |
gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt |
236 |
Q |
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| T |
22178805 |
gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaactatcgtatt |
22178726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 19588574 - 19588495
Alignment:
| Q |
157 |
gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt |
236 |
Q |
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| T |
19588574 |
gcttgggaacgatgcaaccatttggtacaatcttggcttattaattccgtttctgattcaattgctcaaactatcgtatt |
19588495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 12283717 - 12283796
Alignment:
| Q |
157 |
gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt |
236 |
Q |
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| T |
12283717 |
gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttttgattcaattgctcaaactatcgtatt |
12283796 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 52776097 - 52776176
Alignment:
| Q |
157 |
gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt |
236 |
Q |
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| T |
52776097 |
gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttctgattcaattgctcaaactatcgtatt |
52776176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 30757929 - 30757876
Alignment:
| Q |
95 |
gatcaatgtagcgtgctttgggagctaaaaacaagcttcccttcatcaatggaa |
148 |
Q |
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| T |
30757929 |
gatcaatgcagcgtgctttgggtgttaagaacaagcttccctttatcaatggaa |
30757876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 30765381 - 30765328
Alignment:
| Q |
95 |
gatcaatgtagcgtgctttgggagctaaaaacaagcttcccttcatcaatggaa |
148 |
Q |
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| T |
30765381 |
gatcaatgcagcgtgctttgggtgttaagaacaagcttccctttatcaatggaa |
30765328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 30757839 - 30757763
Alignment:
| Q |
155 |
atgcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactata |
231 |
Q |
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| T |
30757839 |
atgcttcggaaagatgcaatcatttggtatagtcttggattattaattctgtttctgattcaatttctcaaactata |
30757763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 30765291 - 30765215
Alignment:
| Q |
155 |
atgcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactata |
231 |
Q |
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| T |
30765291 |
atgcttcggaaagatgcaatcatttggtatagtcttggattattaattctgtttctgattcaatttctcaaactata |
30765215 |
T |
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Target: scaffold0329 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 9426 - 9505
Alignment:
| Q |
157 |
gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt |
236 |
Q |
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| T |
9426 |
gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaactatcgtatt |
9505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 29497874 - 29497947
Alignment:
| Q |
157 |
gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactat |
230 |
Q |
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| T |
29497874 |
gcttgggaacgatgcaaccatgtggtacaatcttggcttactaattttgtttctgatttcattgctcaaactat |
29497947 |
T |
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