View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12295_high_1 (Length: 482)
Name: NF12295_high_1
Description: NF12295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12295_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 151 - 429
Target Start/End: Original strand, 3131031 - 3131310
Alignment:
| Q |
151 |
tgctcacgtgtcattttaagtgaataaaaatggatcgttagatttacaaaaataaagggttaaaatttgacatcaaattaaactttgacactgatatata |
250 |
Q |
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| T |
3131031 |
tgctcacgtgtcattttaagtgaataaaaatggatcgttagatttacataaataaatggttaaaatttgacatcaaattaaactttgacattgatatata |
3131130 |
T |
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| Q |
251 |
aatggaaaaggatatatatagcgaattgatttatcctgaaaccgttccgacgtgtgctttacatagcacatgtttttattgacttcannnnnnnccacta |
350 |
Q |
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| T |
3131131 |
aatggaaaaagatatatatagcgaattgatttatcctgaaaccgttccgacgtatgctttacatagcacatgtttttgttgacttcatttttttccacta |
3131230 |
T |
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| Q |
351 |
cctctcttgaattccgctaatccatgtttactcattggtt-acgcgtattcgctaagctctcgtgaaagcacttgtcgct |
429 |
Q |
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| T |
3131231 |
cctctcttgaattccgctaatccatgtttactcattggttgttgtttattcgctaagctcccgtgaaagcatttgtcgct |
3131310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 3130946 - 3131004
Alignment:
| Q |
30 |
cacgaaggttaaaataagaaaaagaataagaaatttagacaatatcagggtatgttgcg |
88 |
Q |
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| T |
3130946 |
cacgaaggttaaaataagaaaaagaataagaaatttagacaatatcagggtatgttgcg |
3131004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 3131280 - 3131337
Alignment:
| Q |
425 |
tcgctaagctctcgtgaaagcacttgtcgctggaaatagcaatgctctatatcaattg |
482 |
Q |
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| T |
3131280 |
tcgctaagctcccgtgaaagcatttgtcgctggaaatagcaatgctctatatcaattg |
3131337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 6529630 - 6529589
Alignment:
| Q |
348 |
ctacctctcttgaattccgctaatccatgtttactcattggt |
389 |
Q |
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| T |
6529630 |
ctacctcccttgaattccgctaatacatgtttattcattggt |
6529589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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