View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12295_high_2 (Length: 446)

Name: NF12295_high_2
Description: NF12295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12295_high_2
NF12295_high_2
[»] chr4 (32 HSPs)
chr4 (228-444)||(4362300-4362517)
chr4 (322-441)||(4346199-4346318)
chr4 (95-223)||(6607399-6607527)
chr4 (67-229)||(31846780-31846960)
chr4 (257-444)||(4336683-4336867)
chr4 (94-230)||(31012152-31012297)
chr4 (95-202)||(6608375-6608482)
chr4 (68-121)||(30023482-30023535)
chr4 (77-145)||(54223561-54223629)
chr4 (71-149)||(11392303-11392379)
chr4 (163-217)||(30023639-30023694)
chr4 (67-122)||(30023650-30023704)
chr4 (75-126)||(53261096-53261147)
chr4 (86-135)||(38324924-38324973)
chr4 (93-150)||(43063542-43063599)
chr4 (379-434)||(4122984-4123040)
chr4 (169-223)||(53261093-53261148)
chr4 (95-136)||(9712943-9712984)
chr4 (169-229)||(36273057-36273118)
chr4 (96-136)||(22435379-22435419)
chr4 (97-194)||(2254564-2254657)
chr4 (191-225)||(32008368-32008402)
chr4 (68-122)||(40789264-40789318)
chr4 (68-146)||(41306689-41306767)
chr4 (68-122)||(50384104-50384158)
chr4 (173-218)||(54223561-54223607)
chr4 (1-41)||(4362179-4362220)
chr4 (191-220)||(54613030-54613059)
chr4 (192-220)||(31846924-31846952)
chr4 (74-122)||(36273062-36273110)
chr4 (72-104)||(53261221-53261253)
chr4 (67-103)||(54613022-54613058)
[»] chr3 (24 HSPs)
chr3 (71-227)||(31342009-31342165)
chr3 (67-202)||(11512385-11512520)
chr3 (97-223)||(20286932-20287058)
chr3 (68-227)||(22893891-22894058)
chr3 (69-122)||(29081704-29081757)
chr3 (68-226)||(32385358-32385525)
chr3 (170-220)||(22894000-22894051)
chr3 (96-227)||(48342786-48342918)
chr3 (95-220)||(29081625-29081751)
chr3 (80-149)||(36738272-36738341)
chr3 (68-149)||(48342207-48342296)
chr3 (88-150)||(20496553-20496614)
chr3 (68-122)||(33689261-33689315)
chr3 (68-121)||(20496482-20496535)
chr3 (68-105)||(49159509-49159546)
chr3 (66-122)||(28695423-28695479)
chr3 (178-220)||(11512393-11512436)
chr3 (192-227)||(11512519-11512554)
chr3 (75-122)||(48342793-48342840)
chr3 (96-137)||(16205736-16205777)
chr3 (68-133)||(17546972-17547037)
chr3 (77-118)||(32385366-32385407)
chr3 (192-220)||(48342214-48342242)
chr3 (192-220)||(49159511-49159539)
[»] chr2 (17 HSPs)
chr2 (68-227)||(7755335-7755494)
chr2 (93-229)||(39819087-39819232)
chr2 (93-229)||(12918557-12918702)
chr2 (67-202)||(15562202-15562337)
chr2 (75-144)||(13421772-13421841)
chr2 (71-117)||(5095752-5095798)
chr2 (170-220)||(7755342-7755393)
chr2 (174-220)||(13421794-13421841)
chr2 (75-149)||(34563326-34563400)
chr2 (96-136)||(18182591-18182631)
chr2 (93-145)||(30610238-30610290)
chr2 (66-104)||(5913513-5913551)
chr2 (192-229)||(12918496-12918534)
chr2 (93-122)||(5095818-5095847)
chr2 (192-220)||(5913522-5913550)
chr2 (171-226)||(34563350-34563406)
chr2 (192-220)||(39819060-39819088)
[»] chr7 (16 HSPs)
chr7 (69-225)||(17272699-17272864)
chr7 (69-148)||(7211860-7211939)
chr7 (68-202)||(29681764-29681897)
chr7 (86-178)||(7211947-7212039)
chr7 (66-149)||(25099327-25099410)
chr7 (69-151)||(46282868-46282951)
chr7 (71-220)||(32315713-32315855)
chr7 (71-122)||(32315709-32315760)
chr7 (192-227)||(29681905-29681940)
chr7 (96-202)||(43500011-43500114)
chr7 (68-148)||(4911698-4911778)
chr7 (96-136)||(6980948-6980988)
chr7 (96-136)||(42494799-42494839)
chr7 (178-220)||(7211866-7211909)
chr7 (178-220)||(17272705-17272748)
chr7 (75-120)||(29407499-29407544)
[»] chr1 (28 HSPs)
chr1 (68-202)||(28739338-28739472)
chr1 (68-227)||(50754723-50754891)
chr1 (97-227)||(15928073-15928204)
chr1 (66-230)||(9379806-9379988)
chr1 (93-199)||(9884865-9884971)
chr1 (67-227)||(28045317-28045486)
chr1 (93-193)||(6539593-6539693)
chr1 (96-227)||(10449447-10449579)
chr1 (96-229)||(44938792-44938925)
chr1 (63-130)||(4579163-4579229)
chr1 (75-122)||(10449454-10449501)
chr1 (75-122)||(44801758-44801805)
chr1 (69-136)||(44291048-44291115)
chr1 (69-122)||(28928779-28928832)
chr1 (169-202)||(35251201-35251234)
chr1 (74-149)||(45215168-45215244)
chr1 (86-122)||(28810065-28810101)
chr1 (74-122)||(44938800-44938848)
chr1 (68-138)||(718981-719060)
chr1 (178-220)||(28739422-28739465)
chr1 (114-149)||(41526193-41526228)
chr1 (68-228)||(44801750-44801920)
chr1 (68-122)||(48823884-48823938)
chr1 (198-227)||(34026752-34026781)
chr1 (70-119)||(47817712-47817761)
chr1 (75-103)||(9884973-9885001)
chr1 (68-104)||(10449579-10449615)
chr1 (178-221)||(50754729-50754773)
[»] chr6 (16 HSPs)
chr6 (74-227)||(2543735-2543896)
chr6 (68-228)||(11448056-11448225)
chr6 (75-148)||(369498-369571)
chr6 (96-228)||(16193757-16193889)
chr6 (169-227)||(369519-369578)
chr6 (75-122)||(16193834-16193881)
chr6 (75-120)||(28581738-28581783)
chr6 (80-136)||(2980786-2980842)
chr6 (178-227)||(28581731-28581781)
chr6 (68-122)||(31654304-31654358)
chr6 (95-136)||(178660-178701)
chr6 (178-220)||(2543852-2543895)
chr6 (71-122)||(10521851-10521902)
chr6 (67-104)||(369436-369473)
chr6 (95-151)||(1879187-1879243)
chr6 (71-146)||(35049740-35049816)
[»] chr5 (19 HSPs)
chr5 (74-230)||(5215557-5215723)
chr5 (66-198)||(9177874-9178006)
chr5 (93-199)||(29385313-29385419)
chr5 (93-202)||(19417469-19417577)
chr5 (97-151)||(1839999-1840053)
chr5 (77-149)||(23219360-23219432)
chr5 (98-227)||(36568733-36568871)
chr5 (74-150)||(896274-896350)
chr5 (86-138)||(42772054-42772106)
chr5 (71-202)||(25879334-25879461)
chr5 (93-149)||(7137665-7137721)
chr5 (71-151)||(31848160-31848239)
chr5 (96-227)||(12605582-12605714)
chr5 (81-122)||(12605660-12605701)
chr5 (68-105)||(29385416-29385453)
chr5 (169-211)||(42772065-42772108)
chr5 (68-122)||(22097488-22097542)
chr5 (192-220)||(19417442-19417470)
chr5 (192-220)||(29385418-29385446)
[»] chr8 (8 HSPs)
chr8 (95-202)||(43465112-43465222)
chr8 (81-126)||(45051339-45051384)
chr8 (96-223)||(33763461-33763589)
chr8 (96-202)||(31470771-31470878)
chr8 (192-229)||(1605047-1605084)
chr8 (96-200)||(7931550-7931655)
chr8 (77-116)||(33763466-33763505)
chr8 (93-122)||(31470849-31470878)
[»] scaffold1315 (2 HSPs)
scaffold1315 (163-220)||(1819-1877)
scaffold1315 (74-122)||(1818-1866)
[»] scaffold1293 (2 HSPs)
scaffold1293 (163-220)||(194-252)
scaffold1293 (74-122)||(205-253)
[»] scaffold0343 (2 HSPs)
scaffold0343 (96-149)||(12285-12338)
scaffold0343 (192-227)||(12226-12261)
[»] scaffold0001 (1 HSPs)
scaffold0001 (93-151)||(507740-507798)
[»] scaffold0047 (1 HSPs)
scaffold0047 (74-110)||(13398-13434)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 228 - 444
Target Start/End: Original strand, 4362300 - 4362517
Alignment:
Q  228 gttcaattgaatgggagtttggaaaattaggtgtccaaa-tatcattgttgttgtttctattgataagaatacgaatagtcatcttataaagaatattat 326  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4362300 gttcaattgaatgggagtttggaaaattaggtgtccaaaatatcattgttgttgtttctattgataagaatacgaataatcatcttataaagaatattat 4362399  T
Q  327 atatttaatttttgaataaatgattgtgatgttaatatatcgttaaatcaaatatttccactttttacagaatttgactgtcgatgggcgtggtagtttt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4362400 atatttaatttttgaataaatgattgtgatgttaatatatcgttaaatcaaatatttccactttttacagaatttgactgtcgatgggcgtggtagtttt 4362499  T
Q  427 ttgctccctggtgatgat 444  Q
    ||||||||||||||||||    
T  4362500 ttgctccctggtgatgat 4362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 322 - 441
Target Start/End: Original strand, 4346199 - 4346318
Alignment:
Q  322 attatatatttaatttttgaataaatgattgtgatgttaatatatcgttaaatcaaatatttccactttttacagaatttgactgtcgatgggcgtggta 421  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4346199 attatatatttaatttttgaataaatgattgtgatattaatatattgttaaatcaaatatttctactttttacagaatttgactgtcgatgggcgtggta 4346298  T
Q  422 gttttttgctccctggtgat 441  Q
    ||||||||||||| ||||||    
T  4346299 gttttttgctccccggtgat 4346318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 6607527 - 6607399
Alignment:
Q  95 ggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaat 194  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  6607527 ggtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaat 6607428  T
Q  195 gtcaccaaccacaatgtcacccaagtatt 223  Q
    ||||||||||||||||||||| |||||||    
T  6607427 gtcaccaaccacaatgtcacctaagtatt 6607399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 67 - 229
Target Start/End: Complemental strand, 31846960 - 31846780
Alignment:
Q  67 ggggtagcacttgggtgatattgtggttggtgacattgg---------ccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnn 157  Q
    |||||||||||||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||          
T  31846960 ggggtagcacttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 31846861  T
Q  158 ngttgttttgcacacttgtaacattgtggttggt---------aatgtcaccaaccacaatgtcacccaagtattatccgt 229  Q
     |||||||||||||||||||||||| ||||||||         |||||||||||||| |||||||||||||||||||||||    
T  31846860 tgttgttttgcacacttgtaacattttggttggtaatgtcacgaatgtcaccaaccataatgtcacccaagtattatccgt 31846780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 257 - 444
Target Start/End: Original strand, 4336683 - 4336867
Alignment:
Q  257 ggtgtccaaatatcattgttgttgtttctattgataagaatacgaatagtcatcttataaagaatattatatatttaatttttgaataaatgattgtgat 356  Q
    ||||||||||||||||||||||  ||| |||| || | ||||| |||    ||||| | | |||| |||||||||||||||| ||| |||| ||| ||||    
T  4336683 ggtgtccaaatatcattgttgtaatttttatttatcaaaatactaatt---atcttttgaggaatgttatatatttaattttggaacaaattattttgat 4336779  T
Q  357 gttaatatatcgttaaatcaaatatttccactttttacagaatttgactgtcgatgggcgtggtagttttttgctccctggtgatgat 444  Q
     |||||||    |||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||  ||||||||    
T  4336780 attaatatggttttaaatcaaatatttccactttctacagaatgtgactgtcgatgggtgtggtagctttttgctccccagtgatgat 4336867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 31012152 - 31012297
Alignment:
Q  94 tggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttgg--- 190  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||         ||||||||||| |||||||| |||||||||||       
T  31012152 tggtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttgttttgcatacttgtaatattgtggttggtaa 31012251  T
Q  191 ------taatgtcaccaaccacaatgtcacccaagtattatccgtt 230  Q
          ||||||||||||||||||||||||| ||||||||||||||    
T  31012252 tgtcactaatgtcaccaaccacaatgtcacctaagtattatccgtt 31012297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 202
Target Start/End: Original strand, 6608375 - 6608482
Alignment:
Q  95 ggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga-nnnnnnngttgttttgcacacttgtaacattgtggttggtaa 193  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||        ||||||||||| |||||||||||||||||||||||    
T  6608375 ggtgacattggccaaccataatgtcacacgtggcttccttctttttctttca-aagattctttttgttgttttgcagacttgtaacattgtggttggtaa 6608473  T
Q  194 tgtcaccaa 202  Q
    |||||||||    
T  6608474 tgtcaccaa 6608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 30023482 - 30023535
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcac 121  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||    
T  30023482 gggtagcacttaggtgatattgtggttggtgacattggtcaaccataatgtcac 30023535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 54223561 - 54223629
Alignment:
Q  77 ttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttc 145  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||||  || ||||||||||| ||||||    
T  54223561 ttggatgacattgtggttggtgacattgaccaaccacaatgtcacaaatgtctttcttctttctctttc 54223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 11392303 - 11392379
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 149  Q
    |||||||||||||| |||||||||| ||| ||||||| ||||||||||||||   ||||||||||| | ||||||||||    
T  11392303 tagcacttgggtgacattgtggttgatgaaattggcctaccacaatgtcaca--aggctttcttctctctctttcacaa 11392379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 30023639 - 30023694
Alignment:
Q  163 ttttgcacacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcaccca 217  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  30023639 ttttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcaccca 30023694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 30023704 - 30023650
Alignment:
Q  67 ggggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  30023704 ggggtagcact-gggtgacattgtggttggtgacattgaccaaccacaatgtcaca 30023650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 53261096 - 53261147
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtg 126  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  53261096 acttaggtgacattgtggttggtgacattgaccaaccacaatgtcacatgtg 53261147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 38324973 - 38324924
Alignment:
Q  86 attgtggttggtgacattggccaaccacaatgtcacatgtggctttcttc 135  Q
    |||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  38324973 attgtggttggtgatattggccaaccataatatcacatgtggctttcttc 38324924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 43063542 - 43063599
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaag 150  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||  |||||||||||||    
T  43063542 ttggtgacattagccaaccacaatgtcacaagtggctttcatcactttctttcacaag 43063599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 4123040 - 4122984
Alignment:
Q  379 tatttccacttttt-acagaatttgactgtcgatgggcgtggtagttttttgctccc 434  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||    
T  4123040 tatttccacttttttacagaatttgactgtcgacgggggtggtagtgttttgctccc 4122984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 53261148 - 53261093
Alignment:
Q  169 acacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagtatt 223  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||    
T  53261148 acacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcacctaagtatt 53261093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 9712984 - 9712943
Alignment:
Q  95 ggtgacattggccaaccacaatgtcacatgtggctttcttct 136  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  9712984 ggtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 36273057 - 36273118
Alignment:
Q  169 acacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagtattatccgt 229  Q
    |||||||| | |||||||||||| ||| ||||| ||||||||||||||||||| ||||||||    
T  36273057 acacttgtgatattgtggttggtcaatatcaccgaccacaatgtcacccaagtgttatccgt 36273118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 22435379 - 22435419
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttct 136  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  22435379 gtgacattggcaaaccacaatgtcacaagtggctttcttct 22435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 2254564 - 2254657
Alignment:
Q  97 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaat 194  Q
    |||||||| ||||||||||||||||||||| ||||    ||||| |||||  |||       ||||||||| ||||||||||||||||| ||||||||    
T  2254564 tgacattgaccaaccacaatgtcacatgtgacttt----tttttttttcattagacttttttgttgttttgtacacttgtaacattgtgattggtaat 2254657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 32008368 - 32008402
Alignment:
Q  191 taatgtcaccaaccacaatgtcacccaagtattat 225  Q
    |||||||||||||||||||||||||||||| ||||    
T  32008368 taatgtcaccaaccacaatgtcacccaagtgttat 32008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 40789318 - 40789264
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||||||| || | | ||||||| ||||||||| ||||||||||||    
T  40789318 gggtagcacttgggtgacatagagtttggtgatattggccaatcacaatgtcaca 40789264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 41306767 - 41306689
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttca 146  Q
    ||||||||||||   || |||||||||||||| |||| ||||||| |||||||||  ||  |||||||| |||||||||    
T  41306767 gggtagcacttgaacgacattgtggttggtgatattgaccaaccataatgtcacaaatgtatttcttctctttctttca 41306689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 50384104 - 50384158
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||||||| || | | | ||||||||||||||| ||||||||||||    
T  50384104 gggtagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcaca 50384158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 54223607 - 54223561
Alignment:
Q  173 ttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaa 218  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||    
T  54223607 ttgtgacattgtggttggtcaatgtcaccaaccacaatgtcatccaa 54223561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4362179 - 4362220
Alignment:
Q  1 gttgcactactctagccttttataaaataaaa-agagagaga 41  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  4362179 gttgcaccactctagccttttataaaataaaagagagagaga 4362220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 54613059 - 54613030
Alignment:
Q  191 taatgtcaccaaccacaatgtcacccaagt 220  Q
    ||||||||||||||||||||||||||||||    
T  54613059 taatgtcaccaaccacaatgtcacccaagt 54613030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 31846924 - 31846952
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||||||||||||||||||    
T  31846924 aatgtcaccaaccacaatgtcacccaagt 31846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 36273110 - 36273062
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||| |||||||| ||||| |||| ||||||||||| |||||    
T  36273110 cacttgggtgacattgtggtcggtgatattgaccaaccacaatatcaca 36273062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 53261253 - 53261221
Alignment:
Q  72 agcacttgggtgatattgtggttggtgacattg 104  Q
    ||||||||||||| |||||||||||||||||||    
T  53261253 agcacttgggtgaaattgtggttggtgacattg 53261221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 54613022 - 54613058
Alignment:
Q  67 ggggtagcacttgggtgatattgtggttggtgacatt 103  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  54613022 ggggtagaacttgggtgacattgtggttggtgacatt 54613058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 31342009 - 31342165
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcac 170  Q
    ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||    
T  31342009 tagcatttggatgacattgtggttggtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcac 31342108  T
Q  171 acttgtaacattgtggttggtaatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31342109 acttgtaacattgtggttggtaatgtcaccaaccacaatgtcacccaaatattatcc 31342165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 11512385 - 11512520
Alignment:
Q  67 ggggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgtttt 166  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||    
T  11512385 ggggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgtttt 11512484  T
Q  167 gcacacttgtaacattgtggttggtaatgtcaccaa 202  Q
    ||||||||||||||||||||||||||||||||||||    
T  11512485 gcacacttgtaacattgtggttggtaatgtcaccaa 11512520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 20286932 - 20287058
Alignment:
Q  97 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||    
T  20286932 tgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattgtggttggtaatgt 20287031  T
Q  197 caccaaccacaatgtcacccaagtatt 223  Q
    |||||||||||||||||||||| ||||    
T  20287032 caccaaccacaatgtcacccaaatatt 20287058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 22894058 - 22893891
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttg 167  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||       |||||||||    
T  22894058 gggtagcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaaga-ttttttgttgttttg 22893960  T
Q  168 cacacttgtaacattgtggttggt---------aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
     |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  22893959 tacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 22893891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 29081757 - 29081704
Alignment:
Q  69 ggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29081757 ggtagcacttgggtgatattgtggttggtgacattggtcaaccacaatgtcaca 29081704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 226
Target Start/End: Complemental strand, 32385525 - 32385358
Alignment:
Q  68 gggtagcacttgggtgatattgtggttg--------gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnng 159  Q
    ||||||||||| ||||||||||||||||        |||| |||||||||||||||||| | | |||  |||||||||| |||||||||| |       |    
T  32385525 gggtagcacttaggtgatattgtggttgatgatattgtgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaatatttatttg 32385426  T
Q  160 ttgttttgcacacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagtattatc 226  Q
    ||  |||| |||||||| ||||||||||||   ||||||||||| ||||||||||||||| |||||||    
T  32385425 tttatttgtacacttgtcacattgtggttgaccaatgtcaccaatcacaatgtcacccaaatattatc 32385358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 22894000 - 22894051
Alignment:
Q  170 cacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  22894000 cacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagt 22894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 48342918 - 48342786
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttg-gtaat 194  Q
    |||||||| |||||| ||||||||||||||| |||||||| || ||||| |||| |       |||  |||| ||| |||| ||||||||||||   |||    
T  48342918 gtgacattagccaacgacaatgtcacatgtgtctttcttcattctcttttacaatatttttttgtttctttgtacatttgtgacattgtggttgaccaat 48342819  T
Q  195 gtcaccaaccacaatgtcacccaagtattatcc 227  Q
    ||| ||||||| |||||||||||||||||||||    
T  48342818 gtcgccaaccataatgtcacccaagtattatcc 48342786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 29081625 - 29081751
Alignment:
Q  95 ggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttg-gtaa 193  Q
    |||||||||| ||||||||||||||||| || |||||||||||| | ||||| ||          || ||||| |||||||| ||||||||||||   ||    
T  29081625 ggtgacattgaccaaccacaatgtcacaagtagctttcttctttctttttcataaagtttttttttttttttgtacacttgtgacattgtggttgaccaa 29081724  T
Q  194 tgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||||| ||||||||||    
T  29081725 tgtcaccaaccacaatatcacccaagt 29081751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 36738272 - 36738341
Alignment:
Q  80 ggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 149  Q
    |||||| ||||||||||||| ||||| |||||||||| ||||| ||| ||||||||||| | ||||||||    
T  36738272 ggtgatgttgtggttggtgatattggtcaaccacaatatcacaagtgtctttcttctttctttttcacaa 36738341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 48342207 - 48342296
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattg--------gccaaccacaatgtcacatgtggctttcttctttttctttcacaa 149  Q
    ||||||||||||||||| |||||||||||||||||||        ||||||||||||| |||||||| |||||||| || ||||| ||||    
T  48342207 gggtagcacttgggtgacattgtggttggtgacattgtgacattagccaaccacaatgccacatgtgtctttcttcattctcttttacaa 48342296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 20496614 - 20496553
Alignment:
Q  88 tgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaag 150  Q
    ||||||||||||||||| | ||||||||||||||| ||| ||||||||| | |||||||||||    
T  20496614 tgtggttggtgacattgtc-aaccacaatgtcacacgtgactttcttctctctctttcacaag 20496553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 33689315 - 33689261
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||||||| |||| | | ||||||||||||||| ||||||||||||    
T  33689315 gggtagcacttgggtgacattgagttgggtgacattggccaatcacaatgtcaca 33689261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 20496482 - 20496535
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcac 121  Q
    ||||||||||| ||||| |||||||| |||||||||| |||| |||||||||||    
T  20496482 gggtagcactttggtgacattgtggtcggtgacattgaccaatcacaatgtcac 20496535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 49159546 - 49159509
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattgg 105  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  49159546 gggtagcacttgggtgacattgtggttggtgacattgg 49159509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 28695479 - 28695423
Alignment:
Q  66 tggggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||| ||||| | |||| ||||||||||||| ||| ||||||||||||    
T  28695479 tggggtagcacttaggtgacagtgtgattggtgacattggacaatcacaatgtcaca 28695423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 11512436 - 11512393
Alignment:
Q  178 acattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  11512436 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 11512393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 11512519 - 11512554
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    |||||||||||||| |||||||||||||||||||||    
T  11512519 aatgtcaccaaccataatgtcacccaagtattatcc 11512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 48342793 - 48342840
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||||||||| ||| ||||||| |||||||| ||||||||||||||||    
T  48342793 acttgggtgacattatggttggcgacattggtcaaccacaatgtcaca 48342840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 16205736 - 16205777
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctt 137  Q
    |||||||||  |||||||||||||||| ||||||||||||||    
T  16205736 gtgacattgatcaaccacaatgtcacaagtggctttcttctt 16205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 17546972 - 17547037
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttct 133  Q
    ||||||||||||||||| ||     ||||||| |||||||||||| ||||||||| ||||||||||    
T  17546972 gggtagcacttgggtgacataacatttggtgatattggccaaccataatgtcacaagtggctttct 17547037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 32385366 - 32385407
Alignment:
Q  77 ttgggtgatattgtggttggtgacattggccaaccacaatgt 118  Q
    |||||||| |||||| ||||||||||||| ||||||||||||    
T  32385366 ttgggtgacattgtgattggtgacattggtcaaccacaatgt 32385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 48342242 - 48342214
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||||||||||||||||||    
T  48342242 aatgtcaccaaccacaatgtcacccaagt 48342214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 49159511 - 49159539
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||||||||||||||||||    
T  49159511 aatgtcaccaaccacaatgtcacccaagt 49159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 7e-56; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 7755335 - 7755494
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttg 167  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||       |||||||||    
T  7755335 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttg 7755434  T
Q  168 cacacttgtaacattgtggttggtaatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  7755435 tacacttgtaacattgtgattggtaatgtcaccaaccacaatgtcacccaaatattatcc 7755494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 39819087 - 39819232
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt- 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||     
T  39819087 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaatattgtggttggta 39819186  T
Q  192 --------aatgtcaccaaccacaatgtcacccaagtattatccgt 229  Q
            ||||||||||||||||||||||||||||||||||||||    
T  39819187 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatccgt 39819232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 12918557 - 12918702
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt- 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||       ||||||||||||| |||||||||||||||||||     
T  12918557 ttggtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcacatttgtaacattgtggttggta 12918656  T
Q  192 --------aatgtcaccaaccacaatgtcacccaagtattatccgt 229  Q
            ||||||||||||||||||||||||||||||||||||||    
T  12918657 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatccgt 12918702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 15562202 - 15562337
Alignment:
Q  67 ggggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgtttt 166  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||  |||||  ||       ||||||||    
T  15562202 ggggtagcatttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgtttt 15562301  T
Q  167 gcacacttgtaacattgtggttggtaatgtcaccaa 202  Q
    ||||||||||||||||||| ||||||||||||||||    
T  15562302 gcacacttgtaacattgtgattggtaatgtcaccaa 15562337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 13421841 - 13421772
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttt 144  Q
    |||||||||| ||||||||||||||||||| |||||||||| || ||||||| ||||||| |||||||||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttacatgtgactttcttttttttcttt 13421772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 5095752 - 5095798
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatg 117  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||    
T  5095752 tagcacttgggtgatattgtggttggtgacattagacaaccacaatg 5095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 7755393 - 7755342
Alignment:
Q  170 cacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    ||||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  7755393 cacttgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 7755342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 13421794 - 13421841
Alignment:
Q  174 tgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  13421794 tgtaacgttgtggttggtcaatgtcaccaaccacaatgtcacccaagt 13421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 34563400 - 34563326
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 149  Q
    |||| ||||| || |||||||||||||||| |||||  |||||||||| ||  |||||||| |||||||||||||    
T  34563400 actttggtgacatcgtggttggtgacattgaccaacttcaatgtcacaagtatctttcttcattttctttcacaa 34563326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 18182631 - 18182591
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttct 136  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  18182631 gtgacattggcaaaccacaatgtcacaagtggctttcttct 18182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 30610290 - 30610238
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttc 145  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| | ||||||    
T  30610290 ttggtgacattggccaaccataatgtcacatgtgacttttttctgtctctttc 30610238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 5913513 - 5913551
Alignment:
Q  66 tggggtagcacttgggtgatattgtggttggtgacattg 104  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  5913513 tggggtaacacttgggtgacattgtggttggtgacattg 5913551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 12918534 - 12918496
Alignment:
Q  192 aatgtcaccaaccacaatgtcaccc-aagtattatccgt 229  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  12918534 aatgtcaccaaccacaatgtcacccaaagtattatccgt 12918496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 5095847 - 5095818
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||||||||||||||||||||    
T  5095847 ttggtgacattggccaaccacaatgtcaca 5095818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 5913550 - 5913522
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||||||||||||||||||    
T  5913550 aatgtcaccaaccacaatgtcacccaagt 5913522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 34563350 - 34563406
Alignment:
Q  171 acttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagtattatc 226  Q
    |||||| ||||||  |||||| ||||||||||||||| |||||||| ||||||||||    
T  34563350 acttgtgacattgaagttggtcaatgtcaccaaccacgatgtcaccaaagtattatc 34563406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 39819088 - 39819060
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||||||||||||||||||    
T  39819088 aatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 69 - 225
Target Start/End: Original strand, 17272699 - 17272864
Alignment:
Q  69 ggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgc 168  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  17272699 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgc 17272798  T
Q  169 acacttgtaacattgtggttggtaatg---------tcaccaaccacaatgtcacccaagtattat 225  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  17272799 acacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 7211860 - 7211939
Alignment:
Q  69 ggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 148  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7211860 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 29681764 - 29681897
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttg 167  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||| ||||||       ||||||||     
T  29681764 gggtagcattttggtgacattgtggttggtgacattggccaaccacaacgtcacatgtggcttt-tttttttttttttacaagatatttttgttgtttta 29681862  T
Q  168 cacacttgtaacattgtggttggtaatgtcaccaa 202  Q
    |||||||||||||||||||||||||||||||||||    
T  29681863 cacacttgtaacattgtggttggtaatgtcaccaa 29681897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 7212039 - 7211947
Alignment:
Q  86 attgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaa 178  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  7212039 attgtggtgggagacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 25099410 - 25099327
Alignment:
Q  66 tggggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 149  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  25099410 tggggtagcacttgagtgaaattgtggttggtgactttggtcaaccacaatgtcacaagtgtctttcttctttttctttcacaa 25099327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 46282868 - 46282951
Alignment:
Q  69 ggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtgg-ctttcttctttttctttcacaaga 151  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||| ||||  |||||||||| ||||||||||||    
T  46282868 ggtagcacttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtggtttttcttctttctctttcacaaga 46282951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 32315855 - 32315713
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcac 170  Q
    ||||| |||||| | |||||||||||||||||||| |||| ||||||||| | ||||||||||||| | | ||||| |||        ||| ||||| ||    
T  32315855 tagcagttgggtcaaattgtggttggtgacattggtcaactacaatgtcagaagtggctttcttctctctttttcataag--------gtttttttgtac 32315764  T
Q  171 acttgtaacattgtggttgg-taatgtcaccaaccacaatgtcacccaagt 220  Q
    | |||| |||||||||||||  ||||||||||||||||||||||| |||||    
T  32315763 aattgtgacattgtggttggccaatgtcaccaaccacaatgtcacgcaagt 32315713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 32315709 - 32315760
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  32315709 tagcacttgcgtgacattgtggttggtgacattggccaaccacaatgtcaca 32315760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 29681905 - 29681940
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  29681905 aatgtcaccaaccacaatgtcacccaagtattatcc 29681940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 43500011 - 43500114
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 195  Q
    |||| ||||| ||| ||||||||||||| || | |||||||||||||||||||  |       ||||||||| ||  |||||||||||||||||||||||    
T  43500011 gtgatattggtcaatcacaatgtcacatatgacattcttctttttctttcaca--atttttttgttgttttgtac-tttgtaacattgtggttggtaatg 43500107  T
Q  196 tcaccaa 202  Q
    |||||||    
T  43500108 tcaccaa 43500114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 4911778 - 4911698
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 148  Q
    ||||| ||||||||||| |||||| | ||||| ||||| |||| | ||||||||| |||  |||||||||| |||||||||    
T  4911778 gggtaacacttgggtgacattgtgatcggtgatattggtcaactataatgtcacaggtgaatttcttctttctctttcaca 4911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 6980988 - 6980948
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttct 136  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  6980988 gtgacattggccaaccacaatgttacaagtggctttcttct 6980948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 42494799 - 42494839
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttct 136  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  42494799 gtgacattggcaaaccacaatgtcacaagtggctttcttct 42494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 7211909 - 7211866
Alignment:
Q  178 acattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  7211909 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 7211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 17272748 - 17272705
Alignment:
Q  178 acattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  17272748 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 17272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 29407499 - 29407544
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtca 120  Q
    |||||||||||||||| || ||||| |||||||||| |||||||||    
T  29407499 acttgggtgatattgtcgtcggtgatattggccaactacaatgtca 29407544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 28739472 - 28739338
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttg 167  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||       ||| |||||    
T  28739472 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttg 28739373  T
Q  168 cacacttgtaacattgtggttggtaatgtcaccaa 202  Q
    |||||||||||||||||||||||||||||||||||    
T  28739372 cacacttgtaacattgtggttggtaatgtcaccaa 28739338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 50754723 - 50754891
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttg 167  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||    
T  50754723 gggtagtactttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttg 50754822  T
Q  168 cacacttgtaacattgtggttggt---------aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    |||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||    
T  50754823 cacacttgtaacattgtggttgataatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 50754891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 15928204 - 15928073
Alignment:
Q  97 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnn-gttgttttgcacacttgtaacattgtggttggtaatg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||| |||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatg 15928105  T
Q  196 tcaccaaccacaatgtcacccaagtattatcc 227  Q
    ||||||| ||||||||||||||||||||||||    
T  15928104 tcaccaatcacaatgtcacccaagtattatcc 15928073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 9379806 - 9379988
Alignment:
Q  66 tggggtagcacttgggtgatattgtggttggtgacattg---------gccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnn 156  Q
    |||||||||||||||||||||| ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||         
T  9379806 tggggtagcacttgggtgatatcgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 9379905  T
Q  157 nngttgttttgcacacttgtaacattgtggttggt---------aatgtcaccaaccacaatgtcacccaagtattatccgtt 230  Q
      |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||    
T  9379906 ttgttgttttgcacacttgtaacattgtggttggtaatgttaccaatgtcaccaaccacaatgtcacccaaatattatccgtt 9379988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 9884865 - 9884971
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 192  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||    
T  9884865 ttggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttgata 9884964  T
Q  193 atgtcac 199  Q
    |||||||    
T  9884965 atgtcac 9884971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 28045317 - 28045486
Alignment:
Q  67 ggggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga-nnnnnnngttgttt 165  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||| ||||||         ||||||    
T  28045317 ggggtagcacttgggtgacattgtggttggtga-attggccaaccataatgtcacaagtggctttcttctttttctttaacaagattttcttttttgttt 28045415  T
Q  166 tgcacacttgtaacattgtggttggt---------aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    || |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  28045416 tgtacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 28045486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 6539693 - 6539593
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 192  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  6539693 ttggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttggta 6539594  T
Q  193 a 193  Q
    |    
T  6539593 a 6539593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 10449579 - 10449447
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 194  Q
    |||||||||| ||||||||||||||||  |  ||||||||||| |||||||||| |       |||  |||| |||||||| |||||||||||||| |||    
T  10449579 gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggtcaat 10449480  T
Q  195 gtcaccaaccacaatgtcacccaagtattatcc 227  Q
    |||||||||||||||||||||||||||||||||    
T  10449479 gtcaccaaccacaatgtcacccaagtattatcc 10449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 44938925 - 44938792
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 194  Q
    |||||||||  |||||||||||  ||| ||||||||||||||| ||||||||||          || ||||| |||||||| ||||| |||||||| |||    
T  44938925 gtgacattgaacaaccacaatggtacaagtggctttcttctttctctttcacaaagttttttaatt-ttttgtacacttgtgacattctggttggtcaat 44938827  T
Q  195 gtcaccaaccacaatgtcacccaagtattatccgt 229  Q
    ||||| |||||||||||||||||||| ||||||||    
T  44938826 gtcactaaccacaatgtcacccaagtgttatccgt 44938792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 4579163 - 4579229
Alignment:
Q  63 aattggggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctt 130  Q
    |||||||||||||||||||||| || |   |||||||||||||||||||||||||||||| |||||||    
T  4579163 aattggggtagcacttgggtgacatagaa-ttggtgacattggccaaccacaatgtcacaagtggctt 4579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 10449454 - 10449501
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  10449454 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcaca 10449501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 44801758 - 44801805
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  44801758 acttaggtgatattgtggttgatgacattggccaaccacaatgtcaca 44801805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 44291048 - 44291115
Alignment:
Q  69 ggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttct 136  Q
    ||||||| |||||||| | |||||||||||||| || ||||||||||| |||||| || |||||||||    
T  44291048 ggtagcatttgggtgacaatgtggttggtgacactgaccaaccacaatatcacatatgactttcttct 44291115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 28928779 - 28928832
Alignment:
Q  69 ggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||||||||||||||| || | | ||||||||||||||||| ||||||||||||    
T  28928779 ggtagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcaca 28928832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 35251234 - 35251201
Alignment:
Q  169 acacttgtaacattgtggttggtaatgtcaccaa 202  Q
    ||||||||||||||||||||||||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaa 35251201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 45215168 - 45215244
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatg---tggctttcttctttttctttcacaa 149  Q
    |||||||||||||||||||||   |||||||| |||||||||||||||| |   ||| |||||||||| ||||||||||    
T  45215168 cacttgggtgatattgtggtt--cgacattggtcaaccacaatgtcacaagtgatggatttcttctttctctttcacaa 45215244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 28810101 - 28810065
Alignment:
Q  86 attgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28810101 attgtggttggtgacattggtcaaccacaatgtcaca 28810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 44938800 - 44938848
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||| ||||||||| ||||||||| ||||||| |||||||||    
T  44938800 cacttgggtgacattgtggttagtgacattgaccaaccagaatgtcaca 44938848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 718981 - 719060
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggc---------caaccacaatgtcacatgtggctttcttcttt 138  Q
    |||||||||||| |||| |||||||||||||||||||||         |||||||||||||||| |||||||| ||||||    
T  718981 gggtagcacttgagtgacattgtggttggtgacattggcggcattggacaaccacaatgtcacaagtggcttttttcttt 719060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 28739422 - 28739465
Alignment:
Q  178 acattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  28739422 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 28739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 41526193 - 41526228
Alignment:
Q  114 aatgtcacatgtggctttcttctttttctttcacaa 149  Q
    |||||||||||| |||||||||||||||||||||||    
T  41526193 aatgtcacatgttgctttcttctttttctttcacaa 41526228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 44801920 - 44801750
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattgg-------ccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnn-g 159  Q
    ||||||||||||| ||| |||||||||||||||||||        ||||||| ||| |||||  || ||||||||||| |||||||||| |        |    
T  44801920 gggtagcacttggatgacattgtggttggtgacattgtacgttgaccaaccataatatcacaaatgtctttcttctttctctttcacaatattttttttg 44801821  T
Q  160 ttgttttgcacactt-gtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagtattatccg 228  Q
    || ||||| |||||| || |||||||||||||  ||||||| |||||||||| ||||| ||||||||||||    
T  44801820 tttttttgtacactttgtgacattgtggttggccaatgtcatcaaccacaatatcacctaagtattatccg 44801750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 48823884 - 48823938
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||||||| || | | | ||||||||||||||| ||||||||||||    
T  48823884 gggtagcacttgggtgacatagagttgggtgacattggccaatcacaatgtcaca 48823938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 34026781 - 34026752
Alignment:
Q  198 accaaccacaatgtcacccaagtattatcc 227  Q
    ||||||||||||||||||||||||||||||    
T  34026781 accaaccacaatgtcacccaagtattatcc 34026752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 47817761 - 47817712
Alignment:
Q  70 gtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtc 119  Q
    |||||| || |||||||||||||||| ||| |||| ||||||||||||||    
T  47817761 gtagcatttaggtgatattgtggttgatgatattgaccaaccacaatgtc 47817712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 9885001 - 9884973
Alignment:
Q  75 acttgggtgatattgtggttggtgacatt 103  Q
    |||||||||||||||||||||||||||||    
T  9885001 acttgggtgatattgtggttggtgacatt 9884973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 10449615 - 10449579
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattg 104  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  10449615 gggtagcacttggatgacattgtggttggtgacattg 10449579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 50754773 - 50754729
Alignment:
Q  178 acattgtggttggt-aatgtcaccaaccacaatgtcacccaagta 221  Q
    |||||||||||||  |||||||||||||||||||||||| |||||    
T  50754773 acattgtggttggccaatgtcaccaaccacaatgtcaccaaagta 50754729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 2543896 - 2543735
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacact 173  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |       |||||||| ||||||    
T  2543896 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaa-atttttttgttgttttacacact 2543798  T
Q  174 tgtaacattgtggttggt---------aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  2543797 tgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 2543735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 11448056 - 11448225
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttg 167  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||| | |||| ||||| |||||||||||||||||         |||||||||    
T  11448056 gggtagcacttgggtgacattgtggttggtaatattggccaaccacaatgttatatgtagcttttttctttttctttcacaaattttttttgttgttttg 11448155  T
Q  168 cacacttgtaacattgtggttggtaatg---------tcaccaaccacaatgtcacccaagtattatccg 228  Q
    ||||||| ||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  11448156 cacacttataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatccg 11448225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 369571 - 369498
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 148  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||    
T  369571 acttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcaca 369498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 16193757 - 16193889
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 194  Q
    |||| ||||||||| |||||||||||| ||| ||||||||||| || ||||||| |        | |||||| |||||||| ||||||||||||   |||    
T  16193757 gtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatattttttt-tagttttgtacacttgtgacattgtggttgaccaat 16193855  T
Q  195 gtcaccaaccacaatgtcacccaagtattatccg 228  Q
    ||||||||||||||||||||||||||||||||||    
T  16193856 gtcaccaaccacaatgtcacccaagtattatccg 16193889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 369519 - 369578
Alignment:
Q  169 acacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  369519 acacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcactcaagtattatcc 369578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 16193881 - 16193834
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  16193881 acttgggtgacattgtggttggtgacattggtcaaccacaatgtcaca 16193834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 28581738 - 28581783
Alignment:
Q  75 acttgggtgatattgtggttggtgacattggccaaccacaatgtca 120  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||    
T  28581738 acttggctgacattgtggttggtgacattggccaaccacaatgtca 28581783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 2980842 - 2980786
Alignment:
Q  80 ggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttct 136  Q
    ||||| |||||||||||||| ||||| |||||| ||||||||| |||||||||||||    
T  2980842 ggtgacattgtggttggtgaaattggtcaaccataatgtcacaagtggctttcttct 2980786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 28581781 - 28581731
Alignment:
Q  178 acattgtggttggt-aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  28581781 acattgtggttggccaatgtcaccaaccacaatgtcagccaagtattatcc 28581731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 31654304 - 31654358
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||||||||||||||||||| | | | ||||||||||||||| ||||||||||||    
T  31654304 gggtagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcaca 31654358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 178660 - 178701
Alignment:
Q  95 ggtgacattggccaaccacaatgtcacatgtggctttcttct 136  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  178660 ggtgacattgatcaaccacaatgtcacatgtggctttcttct 178701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 2543852 - 2543895
Alignment:
Q  178 acattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  2543852 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 2543895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 10521851 - 10521902
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||||||||||||| || | | ||||||||||||||||| ||||||||||||    
T  10521851 tagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcaca 10521902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 369436 - 369473
Alignment:
Q  67 ggggtagcacttgggtgatattgtggttggtgacattg 104  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  369436 ggggtagcacttgggtgacattgtggttgatgacattg 369473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 1879187 - 1879243
Alignment:
Q  95 ggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 151  Q
    ||||||||||| |||||||||||||| | ||| ||||||||| | | ||||||||||    
T  1879187 ggtgacattggtcaaccacaatgtcataagtgactttcttctctatttttcacaaga 1879243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 35049740 - 35049816
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttca 146  Q
    ||||| ||| |||| |||| |||||||||  ||| ||||||||||| | ||| ||||| ||||||||||||||||||    
T  35049740 tagcatttgagtgacattgcggttggtgatgttgaccaaccacaatattacaagtggcttttcttctttttctttca 35049816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 5215723 - 5215557
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttcacaagannnnnnngttgttttgcacac 172  Q
    ||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||       ||||||||| ||||    
T  5215723 cacttgggtgacattgtggttgatgacattggtcaaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtacac 5215624  T
Q  173 ttgtaacattgtggttggtaatgtc---------accaaccacaatgtcacccaagtattatccgtt 230  Q
    |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  5215623 ttgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatccgtt 5215557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 9178006 - 9177874
Alignment:
Q  66 tggggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttt 165  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |        ||||||    
T  9178006 tggggtagcacttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttt 9177907  T
Q  166 tgcacacttgtaacattgtggttggtaatgtca 198  Q
    ||||||||| ||||||||||||||||| |||||    
T  9177906 tgcacacttataacattgtggttggtagtgtca 9177874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 29385419 - 29385313
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||       ||||||||||||||||||||||||||||||||||    
T  29385419 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagatttttttgttgttttgcacacttgtaacattgtggttggta 29385320  T
Q  193 atgtcac 199  Q
    || ||||    
T  29385319 atatcac 29385313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 19417469 - 19417577
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 192  Q
    ||||||||||||| |||| ||||||||||||||| |||||||  |||||||||||||||       ||||||||||||||||| ||||||||||||||||    
T  19417469 ttggtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgttgttttgcacacttg-aacattgtggttggta 19417567  T
Q  193 atgtcaccaa 202  Q
    ||||||||||    
T  19417568 atgtcaccaa 19417577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 1839999 - 1840053
Alignment:
Q  97 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1839999 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 1840053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 23219432 - 23219360
Alignment:
Q  77 ttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 149  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||    
T  23219432 ttgggtgacattgtggttggtgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 36568733 - 36568871
Alignment:
Q  98 gacattggccaaccacaa-tgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttg------- 189  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |       ||||||||| |||||||||||||||||||||           
T  36568733 gacattggtcaaccacaaatgtcacatgtggctttcttccttttctttcacaata-ttttttgttgttttgtacacttgtaacattgtggttgattatgt 36568831  T
Q  190 --gtaatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
       ||||||||||||||||||||||||  |||||||||||    
T  36568832 cactaatgtcaccaaccacaatgtcacataagtattatcc 36568871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 896274 - 896350
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaag 150  Q
    ||||||||||| |||||||||||||| ||||  |||||||||||||||| | || |||||||||| ||||| |||||    
T  896274 cacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcggttttcttctttctcttttacaag 896350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 42772106 - 42772054
Alignment:
Q  86 attgtggttggtgacattggccaaccacaatgtcacatgtggctttcttcttt 138  Q
    ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  42772106 attgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttcttt 42772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 25879461 - 25879334
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcac 170  Q
    ||||| |||| ||| |||||||||||||| ||| ||||||||||||||||||||||  |||    |||||   ||||||||        |||||||  ||    
T  25879461 tagcatttggatgacattgtggttggtgatattagccaaccacaatgtcacatgtgatttt----ttttttcgtcacaagacttttttattgttttatac 25879366  T
Q  171 acttgtaacattgtggttggtaatgtcaccaa 202  Q
    ||||||||||||||||||| ||||||||||||    
T  25879365 acttgtaacattgtggttgataatgtcaccaa 25879334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 7137665 - 7137721
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 149  Q
    |||||||||||| ||||||||||||||||| ||| |||||||| || ||||||||||    
T  7137665 ttggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaa 7137721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 31848160 - 31848239
Alignment:
Q  71 tagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 151  Q
    |||||| ||| ||||| |||||||||||| |||| |||||||||| |||||| |||| |||||||| | ||||||||||||    
T  31848160 tagcacatggatgatactgtggttggtgatattgaccaaccacaaggtcacaagtgg-tttcttctctctctttcacaaga 31848239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 12605582 - 12605714
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttg-gtaat 194  Q
    |||||||||  |||||| ||||||||||||| |||||||||||  ||||||||  |       |||  |||| |||| ||| ||||||||||||   |||    
T  12605582 gtgacattgatcaaccataatgtcacatgtgtctttcttctttcactttcacagtacatttttgtttctttgtacacgtgtgacattgtggttgaccaat 12605681  T
Q  195 gtcaccaaccacaatgtcacccaagtattatcc 227  Q
    ||||||||||||||||||||  |||||||||||    
T  12605682 gtcaccaaccacaatgtcacttaagtattatcc 12605714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 12605701 - 12605660
Alignment:
Q  81 gtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  12605701 gtgacattgtggttggtgacattggtcaaccacaatgtcaca 12605660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 29385453 - 29385416
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattgg 105  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29385453 gggtagcacttgggtgacattgtggttggtgacattgg 29385416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 42772065 - 42772108
Alignment:
Q  169 acacttgtaacattgtggttggt-aatgtcaccaaccacaatgt 211  Q
    |||||||| |||||||||||||| ||||||||||||||||||||    
T  42772065 acacttgtgacattgtggttggtcaatgtcaccaaccacaatgt 42772108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 22097542 - 22097488
Alignment:
Q  68 gggtagcacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||  ||| ||||| |||||||||||||| |||| |||||||||||    
T  22097542 gggtagcacttgaatgacattgtagttggtgacattggtcaactacaatgtcaca 22097488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 19417470 - 19417442
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||||||||||||||||||    
T  19417470 aatgtcaccaaccacaatgtcacccaagt 19417442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 29385418 - 29385446
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagt 220  Q
    |||||||||||||||||||||||||||||    
T  29385418 aatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 95 - 202
Target Start/End: Original strand, 43465112 - 43465222
Alignment:
Q  95 ggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtgg---ttggt 191  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||   |||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgtggtggttggt 43465211  T
Q  192 aatgtcaccaa 202  Q
    ||| |||||||    
T  43465212 aatttcaccaa 43465222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 45051384 - 45051339
Alignment:
Q  81 gtgatattgtggttggtgacattggccaaccacaatgtcacatgtg 126  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  45051384 gtgacattgtggttggtgacattggccgaccacaatgtcacatgtg 45051339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 33763589 - 33763461
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttg-gtaat 194  Q
    |||||||||| |||| ||||| ||||| ||| ||||||||||||||||||| || |       |||  |||  ||| |||||| ||||||||||   |||    
T  33763589 gtgacattggtcaactacaatatcacaagtgcctttcttctttttctttcataatatttttttgtttctttatacatttgtaatattgtggttgaccaat 33763490  T
Q  195 gtcaccaaccacaatgtcacccaagtatt 223  Q
    |||||||||||||||||||||||| ||||    
T  33763489 gtcaccaaccacaatgtcacccaattatt 33763461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 31470771 - 31470878
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttgg-taat 194  Q
    ||||||||| ||||||||||||||||| ||  | |||||||||||||||||||| |       |||  |||| |||||||| |||||||||||||  |||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggccaat 31470870  T
Q  195 gtcaccaa 202  Q
    ||||||||    
T  31470871 gtcaccaa 31470878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 1605047 - 1605084
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagtattatccgt 229  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1605047 aatgtcaccaactacaatgtcacccaagtattatccgt 1605084  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 7931655 - 7931550
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 194  Q
    ||||||||||| |||||||||||||||  || ||||||||||| ||||||| || |       |||  |||| |||||||| |||||||||||||| |||    
T  7931655 gtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatatttttttgtttctttgtacacttgtgacattgtggttggtcaat 7931556  T
Q  195 gtcacc 200  Q
    ||||||    
T  7931555 gtcacc 7931550  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 33763466 - 33763505
Alignment:
Q  77 ttgggtgatattgtggttggtgacattggccaaccacaat 116  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  33763466 ttgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 31470878 - 31470849
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||||||||||||||||||||||    
T  31470878 ttggtgacattggccaaccacaatgtcaca 31470849  T

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Target: scaffold1315 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 1877 - 1819
Alignment:
Q  163 ttttgcacacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    ||||| |||||||| | |||||||||| | |||||||||||||||||||||||||||||    
T  1877 ttttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagt 1819  T

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Target: scaffold1315; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 1818 - 1866
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||| |||||||||||||||||||  |||||||||| |||||    
T  1818 cacttgggtgacattgtggttggtgacattgatcaaccacaatatcaca 1866  T

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Target: scaffold1293 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 194 - 252
Alignment:
Q  163 ttttgcacacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaagt 220  Q
    ||||| |||||||| | |||||||||| | |||||||||||||||||||||||||||||    
T  194 ttttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagt 252  T

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Target: scaffold1293; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 253 - 205
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaaccacaatgtcaca 122  Q
    ||||||||||| |||||||||||||||||||  |||||||||| |||||    
T  253 cacttgggtgacattgtggttggtgacattgatcaaccacaatatcaca 205  T

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Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 12338 - 12285
Alignment:
Q  96 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 149  Q
    ||||||||| ||||||||||||||||| ||| | ||||||||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaa 12285  T

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Target: scaffold0343; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 12261 - 12226
Alignment:
Q  192 aatgtcaccaaccacaatgtcacccaagtattatcc 227  Q
    |||||||||||| |||||||||||||||||||||||    
T  12261 aatgtcaccaactacaatgtcacccaagtattatcc 12226  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 507740 - 507798
Alignment:
Q  93 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 151  Q
    |||||||||||| |||| |||||| | ||| |||| |||||||||| ||||||||||||    
T  507740 ttggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaaga 507798  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 13434 - 13398
Alignment:
Q  74 cacttgggtgatattgtggttggtgacattggccaac 110  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  13434 cacttgggtgatattgtggttggtcacattggtcaac 13398  T

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