View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12295_high_3 (Length: 365)
Name: NF12295_high_3
Description: NF12295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12295_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 34563885 - 34563536
Alignment:
| Q |
1 |
acttcatgtagaaccttgcttatagaggtattaatggcctgcttatagtaattttattaattggagaatgatttgacttttattaattaataatatataa |
100 |
Q |
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| T |
34563885 |
acttcatgtagaaccttgcttatagaggtattaatggcctgcttatagtaattttattaattggagaatgatttgacttttattaattaataatatataa |
34563786 |
T |
|
| Q |
101 |
cttgtatatagttttcaattagtacattttggagaatattt-nnnnnnngttttaaccagttgtgcagacctgatttacgtagactttcaatcctatgac |
199 |
Q |
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| T |
34563785 |
cttgtatatagttttcaattagtacattttggagaatatttaaaaaaaggttttaaccagttgtgcagacctgatttacgcagactttcaatcctatgac |
34563686 |
T |
|
| Q |
200 |
attaaatattaaattaatcaaaatcttaataaacaatttttactatccaatctccttcaa-atannnnnnnnactatccaatcaaatttagtcaaccata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |
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| T |
34563685 |
attaaatattaaattaatcaaaatcttaataaacaatttttactatccaatctacttcaattttttttttttactatccaatcaaatttagtcaaccatt |
34563586 |
T |
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| Q |
299 |
ttcttcgacatccgaaagattgaagcaatttgttagttttatatatgtcaa |
349 |
Q |
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||||| || || | |||||||| ||||||||| |||||||||||||||||| |
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| T |
34563585 |
ttctttgatat-caaaagattggagcaatttgctagttttatatatgtcaa |
34563536 |
T |
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