View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12296_high_6 (Length: 308)
Name: NF12296_high_6
Description: NF12296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12296_high_6 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold1407 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 15932835 - 15933114
Alignment:
| Q |
29 |
aatttaagcttttgtttagctatcgtacaattttacaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932835 |
aatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgt |
15932934 |
T |
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| Q |
129 |
tttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932935 |
tttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccatgttgctacctaccttgctataactcaagccgtgagtctata |
15933034 |
T |
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| Q |
229 |
ttgttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgc |
308 |
Q |
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| T |
15933035 |
ttgttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgc |
15933114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 15941177 - 15941456
Alignment:
| Q |
29 |
aatttaagcttttgtttagctatcgtacaattttacaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941177 |
aatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgt |
15941276 |
T |
|
| Q |
129 |
tttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctata |
228 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941277 |
tttcatcattcctttttcattccaacttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctata |
15941376 |
T |
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| Q |
229 |
ttgttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgc |
308 |
Q |
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| T |
15941377 |
ttgttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgc |
15941456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 34657267 - 34657546
Alignment:
| Q |
29 |
aatttaagcttttgtttagctatcgtacaattttacaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgt |
128 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
34657267 |
aatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaattgcaattttgaattaagttactatttcaatttctagttcctgt |
34657366 |
T |
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| Q |
129 |
tttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34657367 |
tttcatcattcctttttcattccaatttagtttttcttgccgtattttccaattgccgtgttgctacctaccttgctttaactcaagccgtgagtctata |
34657466 |
T |
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| Q |
229 |
ttgttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgc |
308 |
Q |
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| T |
34657467 |
ttgttgggtggctatttaattgaatttccattgctaagaattcaatagtgctgtgtgtatttcttcaaattcctggctgc |
34657546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 11164273 - 11164552
Alignment:
| Q |
29 |
aatttaagcttttgtttagctatcgtacaattttacaaattcagaacctttgttaattgcaattttgaattaagtaactatttcaattgctagttcctgt |
128 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11164273 |
aatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttcttaattgcaattttgaattaagtaactatttcaatttctagttcctgt |
11164372 |
T |
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| Q |
129 |
tttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctataactcaagccgtgagtctata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
11164373 |
tttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgctttaactcaagccatgagtctata |
11164472 |
T |
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| Q |
229 |
ttgttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgc |
308 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11164473 |
ttgttgtgtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgc |
11164552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 1305 - 1239
Alignment:
| Q |
29 |
aatttaagcttttgtttagctatcgtacaatt-ttacaaattcagaacctttgttaattgcaatttt |
94 |
Q |
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|||| ||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
1305 |
aattcaagcttttgtttagctatcatacaattcttacaacttcagaacctttgtgaattgcaatttt |
1239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 32557 - 32609
Alignment:
| Q |
43 |
tttagctatcgtacaatt-ttacaaattcagaacctttgttaattgcaatttt |
94 |
Q |
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||||||||||||||||| |||||| ||||||| |||||| |||||||||||| |
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| T |
32557 |
tttagctatcgtacaatccttacaacttcagaatctttgtgaattgcaatttt |
32609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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