View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12297_low_1 (Length: 653)
Name: NF12297_low_1
Description: NF12297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12297_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 10 - 608
Target Start/End: Complemental strand, 42239712 - 42239106
Alignment:
| Q |
10 |
gcagaacctgtgtgcatctacaatacaagagagttttcaagtaattggtgcaattggcacgcaatagagcatta------agtaagtgaaataaattgtt |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
42239712 |
gcagaacctgtgtgcatctacaatacaagagagtgttcaagtaattggtgcaattggcgcgcaatagagcattatattcaagtaagtgaaataaattgtt |
42239613 |
T |
|
| Q |
104 |
ttccttctcaactattgttgtaaatgatcaatgagatactgcatgctaactgtctatgtttggtacatatatgttttagtgcgaacaaagtagttttggt |
203 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239612 |
ttccttctcaacttttgttgtaaatgatcaatgagatattgcatgctaac-----atgtttggtacatatatgttttagtgcgaacaaagtagttttggt |
42239518 |
T |
|
| Q |
204 |
aggatgaagaaggtggtgtaaac--------ttccttcattccaaactctgattgttcctacaaattagaaatgannnnnnnagggtttgggtgggccac |
295 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
42239517 |
aggatgaagaaggtggtgtaaacaatttagattccttcaatccaaactctgattgttccaacaaattagaaatgatttttt-agggtttgggtgggccac |
42239419 |
T |
|
| Q |
296 |
ggcccatccaagccaatgaatggctccgccactgtgcactgccatcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaa |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239418 |
ggcccatccaagccaatgaatggctccgccactgtgcactgccatcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaa |
42239319 |
T |
|
| Q |
396 |
gaaattggaccttttgataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatct |
495 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239318 |
gaaattggaccttttgataatggaatttgatgaaattgatcgtgatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatct |
42239219 |
T |
|
| Q |
496 |
cctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatc |
595 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239218 |
cctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatc |
42239119 |
T |
|
| Q |
596 |
cttcatagttgtg |
608 |
Q |
| |
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||||||||||||| |
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| T |
42239118 |
cttcatagttgtg |
42239106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 352 - 592
Target Start/End: Complemental strand, 17649959 - 17649719
Alignment:
| Q |
352 |
atatttacacctaacaaaagaaatgttaataacacaaatattaagaaa---ttggacctttt-gataatggaatttgatgaaattgatcatcatcaaaat |
447 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||| |||||||||||| ||| | | |
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|
| T |
17649959 |
atatttacacctaacaaaataaatgttaataacacaaatattaaaaaaaaattggacctttttgataatggaacttgacgaaattgatcatgatccag-t |
17649861 |
T |
|
| Q |
448 |
tgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagaga |
547 |
Q |
| |
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| |||||||||||||||| || |||||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
17649860 |
tcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagtttttctctcttccaaatacgtttaatgacactaacagaga |
17649764 |
T |
|
| Q |
548 |
ccgaatacattgacacaatcaattttctagtcccttttttcagtc |
592 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
17649763 |
ctgaatacattgacgcaatcaattttctagtcccttttttcagtc |
17649719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 399 - 608
Target Start/End: Complemental strand, 1328710 - 1328504
Alignment:
| Q |
399 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
497 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
1328710 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
1328612 |
T |
|
| Q |
498 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
597 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
1328611 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
1328515 |
T |
|
| Q |
598 |
tcatagttgtg |
608 |
Q |
| |
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||| |||||| |
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|
| T |
1328514 |
acatggttgtg |
1328504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 399 - 597
Target Start/End: Original strand, 42540845 - 42541040
Alignment:
| Q |
399 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
497 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
42540845 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
42540943 |
T |
|
| Q |
498 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
597 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
42540944 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
42541040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 545 - 597
Target Start/End: Complemental strand, 4745952 - 4745900
Alignment:
| Q |
545 |
agaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
597 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
4745952 |
agactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
4745900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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