View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12297_low_4 (Length: 363)
Name: NF12297_low_4
Description: NF12297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12297_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 29788589 - 29788257
Alignment:
| Q |
19 |
cattgaaacattggaaagtggaagataggtttatgatggataagggaatgcttcatgaagttcatcatccaagcacagaacaggttgattacaaagatgg |
118 |
Q |
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| T |
29788589 |
cattgaaacattggaaagtggaagataggtttatgatggataagggaatgcttcatgaatttcatcatccaagcacagaacaagttgattacaaagatgg |
29788490 |
T |
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| Q |
119 |
atatgaaacatggatgcaatctcagagaggaaggtggagggaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatat |
218 |
Q |
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| T |
29788489 |
atatgaaacatggatgcaatctcagagaggaaggtggagggaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatat |
29788390 |
T |
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| Q |
219 |
ctgtcaacagatgagacgctgcgccaatcgaagcaatttgaagatgcattggatattttaagctcaaacaatgaactcttggtcaggtttctagattcac |
318 |
Q |
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| T |
29788389 |
ctgtcaacagatgagacgctgcgccaatcgaagcaatttgaagatgcattggatattttaagctcaaacaatgaactcttggtcaggtttctagattcac |
29788290 |
T |
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| Q |
319 |
aaaatatttatcaaattccctctactccacagg |
351 |
Q |
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| T |
29788289 |
aaaatatttatcaaattccctctactccacagg |
29788257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 39872140 - 39872236
Alignment:
| Q |
37 |
tggaagataggtttatgatggataagggaatgcttcatgaagttcatcatccaagcacagaacaggttgattacaaagatggatatgaaacatggatgca |
136 |
Q |
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| T |
39872140 |
tggaagataggtttatg---gacaaggaaatgcttcatgaagttcatc---cgagcagagaacaggttgcttacaaagatatttatgaaatatggctgca |
39872233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 39872289 - 39872413
Alignment:
| Q |
159 |
gaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatatctgtcaacagatgagacgctgcgccaatcgaagcaatttg |
258 |
Q |
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||||||||| ||||| |||||||||||| | || || |||||||| |||||||| |||||| |||||||||| | | || ||||||||| | |||| |
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| T |
39872289 |
gaagatgttaatgagaagaagatggctcttatccgccaaaaattcatggaagcaaagcgtctgtctacagatgagaggttacgtcaatcgaaggagtttg |
39872388 |
T |
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| Q |
259 |
aagatgcattggatattttaagctc |
283 |
Q |
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| T |
39872389 |
aggaaacattggaagttttaagctc |
39872413 |
T |
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