View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12298_low_1 (Length: 594)
Name: NF12298_low_1
Description: NF12298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12298_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 305 - 594
Target Start/End: Complemental strand, 44515692 - 44515394
Alignment:
| Q |
305 |
tgtcttccactcatttgcataagaaaccacaggtagtccagtatatttgaaggccttttcagtcggaatgccattatctcttatagtacgaagtacttcc |
404 |
Q |
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| T |
44515692 |
tgtcttccactcatttgcataagaaaccacaggtagtccagtatatttgaaggccttttcagtcggaatgccactatctcttatagtacgaagtacttcc |
44515593 |
T |
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| Q |
405 |
tcacaagtaaagccaccaaccacatcctcaatg---------tgtatattaccttcactcgttttacacattccctccaaccgttgacgtgcaaaacggt |
495 |
Q |
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| T |
44515592 |
tcgcaagtaaagccaccaaccacatcctcaatgcactcaatgtgtatattaccttcactcattttacacattccctccaaccgttgacgtgcaaaacggt |
44515493 |
T |
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| Q |
496 |
ttactgcgtattgtgtagaaagctcaattggatcttcaggcctaagggcgcaattgatcacgctttcaacacaagaaacaacaccaaaaatagaacaga |
594 |
Q |
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| T |
44515492 |
ttactacgtattgtgtagaaagctcaattggatcttcaggcctaagggcgcaattgatcacgctttcaacacaagaaacaacaccaaaaatagaacaga |
44515394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 44515833 - 44515685
Alignment:
| Q |
19 |
ataattctgctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaagt--tcatatcgcctagacagccctcgaattcagacacca |
116 |
Q |
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| T |
44515833 |
ataattctgctcaaacagaaacggatcagaatcactaagacaacatcactgaaaattcaagtcttcatatcacctagacaaccctcggattcagacacca |
44515734 |
T |
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| Q |
117 |
attaaagacataaattaaaagttatatttaa-ggtttaccttgtcttcc |
164 |
Q |
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| T |
44515733 |
attaaagacataaattaaaagttatatttaatggtttaccttgtcttcc |
44515685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 29121050 - 29121146
Alignment:
| Q |
23 |
ttctgctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaag--ttcatatcgcctagaca-gccctcgaattcagacacca |
116 |
Q |
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| T |
29121050 |
ttctgctcaaacagacaaggatcagaaacaccaagacaacaatgctgaaaattcaagtcttcatatcgcctagacacgccctcggattcaaacacca |
29121146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 1917490 - 1917411
Alignment:
| Q |
42 |
gatcagaatcaccaagacaacatcactgaaaattcaag--ttcatatcgcctagaca-gccctcgaattcagacaccaat |
118 |
Q |
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|||||||| ||||||||||||| |||||| |||||| ||||||||||||||||| ||||||| |||||||||||||| |
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| T |
1917490 |
gatcagaaacaccaagacaacaatgctgaaagttcaagtcttcatatcgcctagacatgccctcggattcagacaccaat |
1917411 |
T |
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