View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12298_low_2 (Length: 440)
Name: NF12298_low_2
Description: NF12298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12298_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 16513718 - 16513316
Alignment:
| Q |
20 |
ggcagtatcacttccactgcaaa-attgcaaacctaattattactggtagaagaattaggaatgggaagaacagtttaatgtgtttgccacaccaacctc |
118 |
Q |
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| T |
16513718 |
ggcagtatcacttccactgcaaacattgcaaaattaattattattggtagaagaattaggaatggaaagaatagtttaatgtgtttgctacaccgacctc |
16513619 |
T |
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| Q |
119 |
atgaccaaaaacggatggttacaacaccgtctcaactgcattagtaagtcaaggatatttgcatagtggttaagaacctttccttgtgcaacatactgct |
218 |
Q |
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| T |
16513618 |
atgaccaaaaacggatggttgcagcaccgtctcaactgcattagtaagtcaaggatatttgcatagtggttaagaacctttccttgtgcaacatactgct |
16513519 |
T |
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| Q |
219 |
caaattggacctgtttaagttgaaagaaatggtttatatgtcaaacacaaatagttacctctagaaattcagtaattaaggggagaacaaatttctagta |
318 |
Q |
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| T |
16513518 |
caaattggacctgtttgaattgtataaaacggtttatatgtcaaacacaaatagttacctataaaaacccagtaattaaagggagaacaagtttctagta |
16513419 |
T |
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| Q |
319 |
aaacctatgacaaaaggaaaataaactgccgttcaaatattt---aaagatagcaagctatgacaacttactttagctctcaggaagagagcatcataga |
415 |
Q |
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| T |
16513418 |
aaacctacgacaaaagtgaaataaattgctattcaaatattttttacagatagcaa----tgacaacttactttagctctcaggaagagagcatcataga |
16513323 |
T |
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| Q |
416 |
agtcccg |
422 |
Q |
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| T |
16513322 |
agtcccg |
16513316 |
T |
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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 35532871 - 35532937
Alignment:
| Q |
353 |
aaatatttaaagatagcaagctatgacaacttactttagctctcaggaagagagcatcatagaagtc |
419 |
Q |
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| T |
35532871 |
aaatatttacagatagcaagctatgacaacttactttagctctcatgaagagagcatcatagaagtc |
35532937 |
T |
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