View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12298_low_3 (Length: 436)
Name: NF12298_low_3
Description: NF12298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12298_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 8474195 - 8474606
Alignment:
| Q |
14 |
cagcacagatgaagttgacgaaaacatatgaaatgcaatttagctgcaagtctctgatcttgatagtcgttttttcttgggaagctccaaagtttagatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8474195 |
cagcacagatgaagttgacgaaaacatatgaaatgcaatttagctgcaagtatctgatcttgatagtcgttttttcttgggaagctccaaagtttagatg |
8474294 |
T |
|
| Q |
114 |
gcactagaaatttatttactcatgttattctgatattcatcaatgtgaatgttttcaatgcggcttgtttgttcacatgaaagacataattcactggttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8474295 |
gcactagaaatttatttactcatgttattctgatattcatcaatgtgaatgttttcaatgcggcttgtttgtacacatgaaagacataattcactggttt |
8474394 |
T |
|
| Q |
214 |
catcatcttatatgttcatgtttggtgtcgttggcttgttagtccaacctgatcttagcatctctggatttcaatttacatagtttctttggatgtgttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8474395 |
catcatcttatatgttcatgtttggtgtcgttggcttgttagtccaacctgatcttagcatctctggatttcaatttacatagtttctttggatgtgttt |
8474494 |
T |
|
| Q |
314 |
atagcaacttattaatcgagattgtatcactcccggtttggaaaggactctctcgactggtaattttgacgttaaaaggttcaaaatgcacaagagtgga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8474495 |
atagcaacttattaatcgagattgtatcactcccggtttggaaaggactctctcgactggtaattttgacgttaaaaggttcaaaatgcacaagagtgga |
8474594 |
T |
|
| Q |
414 |
gtaacacaggtt |
425 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8474595 |
gtaacacaggtt |
8474606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University