View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12298_low_4 (Length: 317)
Name: NF12298_low_4
Description: NF12298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12298_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 27495683 - 27495981
Alignment:
| Q |
16 |
atatttttgttacagtcacttctcaattggaagtttaatctcaacaacaaataagtaatatcaaatgcaaatgaactacacaattttctatcaagatgtg |
115 |
Q |
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| T |
27495683 |
atatttttgttacagtcacttctcaattggaagtttaatctcaacaacaaataagtaatatcaaatgcaaatggactacacaattttctatcaagatgtg |
27495782 |
T |
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| Q |
116 |
atctttgctgccatttcaacaaatggactatgcagggttaaagatgactagaactttagtagccattctgctttgaagcgtgtagaataacatagggtat |
215 |
Q |
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| T |
27495783 |
atctttgctgccatttcaacaaatggactatgcagggttaaagatgactagaactttagtagccattctgctttgaagcatgtagaataacatagggtat |
27495882 |
T |
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| Q |
216 |
gcattatatgaaaataattatataacataacataaggcatgtagaataacatgggatattgtcttggagatggagtcttactaggttgaagttgtgtcc |
314 |
Q |
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| T |
27495883 |
gcattacatgaaaataattatataacataacataaggcatgtagaataacatagaatattgtcttggagatggagtcttactaggttgaagttgtgtcc |
27495981 |
T |
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Back To:
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 20903010 - 20903115
Alignment:
| Q |
127 |
catttcaacaaatggactatgcagggttaaagatgactagaactttagtagccattctgctttgaagcgtgtagaat-----aacatagggtatgcatta |
221 |
Q |
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| T |
20903010 |
cattacaacaaatggactatgcagggtcaaatatgaatagaactatataagccattctactttaaagcatgtagaattgaacaacataggtcatgcatta |
20903109 |
T |
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| Q |
222 |
tatgaa |
227 |
Q |
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| T |
20903110 |
tatgaa |
20903115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 29309478 - 29309402
Alignment:
| Q |
127 |
catttcaacaaatggactatgcagggttaaagatgactagaactttagtagccattctgctttgaagcgtgtagaat |
203 |
Q |
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|||| |||||||| ||||||||||||||||| | || || |||| || ||||||||| |||| |||| |||||||| |
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| T |
29309478 |
cattacaacaaatagactatgcagggttaaatacgaatataactctataagccattctactttaaagcatgtagaat |
29309402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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