View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12298_low_5 (Length: 294)
Name: NF12298_low_5
Description: NF12298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12298_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 30901191 - 30901427
Alignment:
| Q |
15 |
acaaagatctcaaccatttgcagcaaccaacaaattgataggtaaaacaaagttacctaaatctccaaatnnnnnnn----ctagtaatcaaaatgagca |
110 |
Q |
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| T |
30901191 |
acaaagatctcaactatttgcagcacccaacaaattaatagataaaacaaagttacctaaatctccaaataaaaaaaaaaactagtaatcaaaatgagca |
30901290 |
T |
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| Q |
111 |
tgatcgcatagtgaacatacctcgttcatcgacgacatcgagcgagcaatggacgatgtggtggagcttgagagcatcatcagcatccgtgaagctctga |
210 |
Q |
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|||||| | ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30901291 |
tgatcgaaaagtgaacctacctcgttcgtcgacgacatcgagcgagcaatggacgatgtggtggagcttgagagcatcatcagcctccgtgaagctctga |
30901390 |
T |
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| Q |
211 |
atgtacaatggattgttctgcagcaatcagagaaatc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30901391 |
atgtacaatggattgttctgcagcaatcagagaaatc |
30901427 |
T |
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