View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_high_1 (Length: 620)
Name: NF12299_high_1
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Original strand, 1016810 - 1017395
Alignment:
| Q |
18 |
caaacttgtacggaaatatgaacactaatgcttggaacaccaatgttaatgccctagatcactttgaacctgccacaacgacactctttcatgacacatc |
117 |
Q |
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| T |
1016810 |
caaacttgtacggaaatatgaacactaatgcttggaacaccaatgttaatgccctagatcactttgaacctgccacaacgacactctttcatgacacatc |
1016909 |
T |
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| Q |
118 |
agctccggcagccctggcaccgatttcacggagtccaagttttcggagcattttctttggggagaattgggcggagctgccgctgaaggaggatgatacc |
217 |
Q |
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| T |
1016910 |
agctccggcagccctggcaccgatttcacggagtccaagttttcggagcattttctttggggagaattgggcggagctgccgctgaaggaggatgatacc |
1017009 |
T |
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| Q |
218 |
gaagacatggtcatctatggagctttgcgcgaagctgctgccaccacgggctggttcccggctagtaacaaagtggtgaacaatgttgatatggcggtga |
317 |
Q |
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| T |
1017010 |
gaagacatggtcatctatggagctttgcgcgaagctgctgccaccacgggctggttcccgcctagtaacaaagtggtgaacaatgttgatatggcggtga |
1017109 |
T |
|
| Q |
318 |
aaatagaagatcaaggtcaaagcagtggaacttcattggtgagtgttgctcacgtgcaacaagcgccaacgactagtaaaaggttagggtaccgtggagt |
417 |
Q |
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| T |
1017110 |
aaatagaagatcaaggtcaaagcagtggaacttcattggcgagtgttgctcacgtgcaacaagtgccaacgactagtaaaaggttagggtaccgtggagt |
1017209 |
T |
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| Q |
418 |
taggagaaggccttggggaaagtatgcggctgagataagggatcctaagagaaatggcgcgagggtgtggcttgggacttatgaaacggctgagaatgca |
517 |
Q |
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| T |
1017210 |
taggagaaggccttggggaaagtatgcggctgagataagggatcctaagagaaatggcgcgagggtgtggcttgggacttatgaaacggctgagaatgca |
1017309 |
T |
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| Q |
518 |
gcgttggcttatgatcgagctgcgtttaaaatacgtggctcaaaagctaagctaaattttcctcatttgatcgactcagattacac |
603 |
Q |
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| T |
1017310 |
gctttggcttatgatcgagctgcgtttaaaatacgtggctcaaaagctaagctaaattttcctcatttgatcgactcagattacac |
1017395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 425 - 594
Target Start/End: Complemental strand, 1002737 - 1002568
Alignment:
| Q |
425 |
aggccttggggaaagtatgcggctgagataagggatcctaagagaaatggcgcgagggtgtggcttgggacttatgaaacggctgagaatgcagcgttgg |
524 |
Q |
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|||||||||||||||| ||| |||||||| || ||||| || | ||| ||||||||||||||||||||||||||||| ||||||| |||| || |||| |
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| T |
1002737 |
aggccttggggaaagtttgcagctgagattagagatccaaataaaaacggcgcgagggtgtggcttgggacttatgagtcggctgaagatgctgctttgg |
1002638 |
T |
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| Q |
525 |
cttatgatcgagctgcgtttaaaatacgtggctcaaaagctaagctaaattttcctcatttgatcgactc |
594 |
Q |
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| T |
1002637 |
cttatgaccgagccgcttttaagatgcgcggctcgaaggctaagttgaacttccctcatttgattgactc |
1002568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 15403561 - 15403609
Alignment:
| Q |
405 |
ggtaccgtggagttaggagaaggccttggggaaagtatgcggctgagat |
453 |
Q |
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| T |
15403561 |
ggtaccgtggtgtaaggagaaggccatggggaaaatatggggctgagat |
15403609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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