View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_high_14 (Length: 285)
Name: NF12299_high_14
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 16308892 - 16308636
Alignment:
| Q |
19 |
agggattacattagatatgccgcaaaatccaaaaatcgccttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaa |
118 |
Q |
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| T |
16308892 |
agggattacattagatatgccgcaaaatccaaaaatcgccttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaa |
16308793 |
T |
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| Q |
119 |
gtaaggattgtttgttacctatctaatctattattttgaattcaatatttgaaccatgtaatgttaatttgcatgaagagagtaagaggcaacgagaagc |
218 |
Q |
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| T |
16308792 |
gtaaggattgtttgttacctatctaatctattattttgaattcaatatttgaaccatgtaatgttaatttgcatgaagagagtaagaggcaacgagaagc |
16308693 |
T |
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| Q |
219 |
ttctgaattattaatgcttctttcttttctggtagggtcatgaagggaagttctctg |
275 |
Q |
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| T |
16308692 |
ttctgaattattaatgcttctttcttttctggtagggtcatgaagggaagttctctg |
16308636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 16300451 - 16300355
Alignment:
| Q |
34 |
tatgccgcaaaatccaaaaatcgccttcatgtttttgactcctggttctttaccatttgagaaattgtgggataacttcttccaagtaaggattgtt |
130 |
Q |
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| T |
16300451 |
tatgccaccaaatccaaaagtcgccttcatgtttttgactcctggttctctaccatttgaaaaattgtgggataactttttccaagtaaggattgtt |
16300355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 16299342 - 16299285
Alignment:
| Q |
216 |
agcttctgaattattaatgcttctttcttttctggtagggtcatgaagggaagttctc |
273 |
Q |
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| T |
16299342 |
agcttctgagttattgatgcttttttcttttctggtagggtcatgaggggaagttctc |
16299285 |
T |
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