View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_high_15 (Length: 266)
Name: NF12299_high_15
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 84 - 260
Target Start/End: Original strand, 39737650 - 39737820
Alignment:
| Q |
84 |
ttacttcgtgagttattaacttgtgtggcaaggaaatgtcttagcttcnnnnnnncgacgttatctaagttttgttttagctataaataacattgtgtat |
183 |
Q |
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| T |
39737650 |
ttacttcgtgagttattaacttgtgtggcaagtaaatgtcttagcttctttttttcgacgttatctaagctttgttttagctataaataacattgtgtat |
39737749 |
T |
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| Q |
184 |
gtgtaagatgaatgatattgataatcaatatcattcgaataaaaaatttcaatttctcttctcacttttcatctcac |
260 |
Q |
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| T |
39737750 |
gtgtaagatgaa------tgataatcaatatcattcgaataaagtttttcaatttctcttctcacttttcatctcac |
39737820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 39737610 - 39737652
Alignment:
| Q |
19 |
aaattaaggggtcatgttaaatt---ataattcaaccatgtta |
58 |
Q |
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| T |
39737610 |
aaattaaggggtcatgttaaattataataattcaaccatgtta |
39737652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 35796985 - 35797018
Alignment:
| Q |
41 |
tataattcaaccatgttagttagagtttggttag |
74 |
Q |
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| T |
35796985 |
tataattcaaccatgttagttagagttcggttag |
35797018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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