View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12299_high_18 (Length: 217)
Name: NF12299_high_18
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 6350710 - 6350898
Alignment:
| Q |
15 |
agaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagttatgatagag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350710 |
agaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgttatggcagttagagagagttatgatagag |
6350809 |
T |
|
| Q |
113 |
tgcagttagtctatgatagctaa--gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctcttcat |
199 |
Q |
| |
|
||||||||||||||| ||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350810 |
tgcagttagtctatggtaggtaaacgcttaagcattttaccaaactcagttagtgaaataatgaattttccctcttctattctcttcat |
6350898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 35081994 - 35082093
Alignment:
| Q |
15 |
agaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagttatgatagag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
35081994 |
agaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgctatggcagttagagagaactatgatagag |
35082093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 35084185 - 35084244
Alignment:
| Q |
136 |
gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctct |
195 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35084185 |
gcttaaccattgtaacaaactcggttagtgaaataatgaattttctctcttctattctct |
35084244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 11021794 - 11021744
Alignment:
| Q |
18 |
aagattacttgagaagcaagtaacttgacatagctctaagtaacttgccac |
68 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
11021794 |
aagattacttgaggagcaagtaacctgacatagctctaacaaacttgccac |
11021744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University