View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12299_high_2 (Length: 560)

Name: NF12299_high_2
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12299_high_2
NF12299_high_2
[»] chr4 (29 HSPs)
chr4 (18-546)||(2390933-2391461)
chr4 (74-546)||(2381305-2381777)
chr4 (75-545)||(2380051-2380512)
chr4 (175-398)||(2382562-2382786)
chr4 (91-223)||(2533992-2534124)
chr4 (415-472)||(2367678-2367735)
chr4 (161-224)||(2621399-2621462)
chr4 (91-214)||(2547223-2547346)
chr4 (418-547)||(2376160-2376289)
chr4 (161-282)||(2525504-2525625)
chr4 (91-200)||(2367923-2368032)
chr4 (161-201)||(12124594-12124634)
chr4 (161-206)||(2361217-2361262)
chr4 (161-290)||(2467294-2467423)
chr4 (169-206)||(2486064-2486101)
chr4 (254-286)||(2376407-2376439)
chr4 (343-443)||(2621192-2621292)
chr4 (418-461)||(1547469-1547512)
chr4 (415-458)||(2373256-2373299)
chr4 (407-482)||(2460589-2460664)
chr4 (414-461)||(12126879-12126926)
chr4 (160-201)||(2373488-2373529)
chr4 (418-463)||(6007668-6007713)
chr4 (89-130)||(12124522-12124563)
chr4 (75-139)||(2382813-2382877)
chr4 (169-224)||(2393829-2393885)
chr4 (247-291)||(2477421-2477465)
chr4 (91-131)||(2625588-2625628)
chr4 (169-201)||(12126658-12126690)
[»] chr1 (3 HSPs)
chr1 (358-482)||(15837955-15838079)
chr1 (432-479)||(9581951-9581998)
chr1 (433-479)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (418-462)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (418-463)||(32152209-32152254)
chr8 (417-482)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (418-473)||(10578802-10578857)
[»] chr5 (3 HSPs)
chr5 (418-464)||(32268773-32268819)
chr5 (418-463)||(41900267-41900312)
chr5 (156-213)||(41900496-41900553)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Complemental strand, 2391461 - 2390933
Alignment:
Q  18 attatcttcatctagcacaaaatcgaacttcctagcagaagtgtaatcagtgcagtctgtttccttgagaacaagttcttcaagtaaagggaagcaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2391461 attatcttcatctagcacaaaatcgaacttcctagcagaagtgtaatcactgcagtctgtttccttgagaacaagttcttcgagtaaagggaagcaatca 2391362  T
Q  118 acaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctt 217  Q
    |||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391361 acaatgaagaagatatccttcttgttgatccaaaaaaattcggaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctt 2391262  T
Q  218 taggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtggagatttgggtaagaagcgtgttggggtgattgtgttgagagaa 317  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||    
T  2391261 tagggattttgtagaagttggaaagaatgagcgatctgaggactaaagggaaagtggagatttgggtaagaagcgtgttggggcgattgcattgagagaa 2391162  T
Q  318 gtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391161 gtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatg 2391062  T
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagtatagtgatctccatcaaggaatttgatgatgtatt 517  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  2391061 gagaatcggagattgttggtgatggagagtaattgtttcgagacgatagaaagagacttgaaagtatagtggtcttcatcaaggaatttgatgatgtatt 2390962  T
Q  518 cccacaactcatctggtaaatttgaacac 546  Q
    |||||||||||||||||||||||||||||    
T  2390961 cccacaactcatctggtaaatttgaacac 2390933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 74 - 546
Target Start/End: Complemental strand, 2381777 - 2381305
Alignment:
Q  74 ctgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagaga 173  Q
    |||||| ||||||||| |||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||       |||  |||||||||||||    
T  2381777 ctgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagaga 2381678  T
Q  174 ggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||  | || ||||| | |||||||||| |||||||||||||||||| |    
T  2381677 ggtcaaatttttcatctttttggacaaagctcggaacccatctttagggattttaaaaaacttggagaaaatgagcgatttgaggtctaaagggaaagcg 2381578  T
Q  274 gagatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttgga 373  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||| |||||| ||||||||||||||||||| ||||||| |||||||    
T  2381577 gagatttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctggatgcgagattgagggatgtgacactagagaagcgttgga 2381478  T
Q  374 agatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagaga 473  Q
    ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||    
T  2381477 agagttgaggaatgaaagggatggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 2381378  T
Q  474 cttgaaagtatagtgatctccatcaaggaatttgatgatgtattcccacaactcatctggtaaatttgaacac 546  Q
    |||||||||  |||| |||||||  ||||||||||||||||||||||| |  |||||||||||| ||||||||    
T  2381377 cttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccataggtcatctggtaaacttgaacac 2381305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 75 - 545
Target Start/End: Complemental strand, 2380512 - 2380051
Alignment:
Q  75 tgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagag 174  Q
    ||||||||||||||| ||| |||||||| |||||||||||||| |||||||| | ||||||||||| |||||||       || ||||||  | | |||     
T  2380512 tgtttccttgagaacgagtacttcaagtgaagggaagcaatcagcaatgaagtaaatatccttcttattgatccaagtaattttgaaacacatgaaagaa 2380413  T
Q  175 gtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtgg 274  Q
    |||||||||||||||||||||||||||| ||| || |||| ||| || |||||| ||| |||||| |||||||||||| |||| |||||||| |||| ||    
T  2380412 gtcaaatttttcatctttttggacaaaggtcgcaatccatttttcgggattttgaagaggttggagagaatgagcgatttgagatctaaaggtaaagcgg 2380313  T
Q  275 agatttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaa 374  Q
    ||||||| ||||||||||||||| ||||||||| ||||| ||         ||||| ||||||||||||||||||||||||  |||    ||| ||| ||    
T  2380312 agatttgtgtaagaagcgtgttgaggtgattgtattgaggga---------ggttgatggatgtgagattgagggatgtgatgttacgacacctttgcaa 2380222  T
Q  375 gatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagac 474  Q
    ||   ||||||| |||||||||||||||||||||||||||| || |||||||| | ||| |||||| |||||||| |||||||||||||| |||||||||    
T  2380221 gaggcgaggaataaaagggatggtttgttgggtgattttgagggtgaatcggaaactgtaggtgatcgagagtaactgtttggagacgatggaaagagac 2380122  T
Q  475 ttgaaagtatagtgatctccatcaaggaatttgatgatgtattcccacaactcatctggtaaatttgaaca 545  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2380121 ttgacagtacagtggtctccatcaaggaatttgatgatgtattcccataactcatctggtaaatttgaaca 2380051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 175 - 398
Target Start/End: Complemental strand, 2382786 - 2382562
Alignment:
Q  175 gtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtctaaagggaaagtgg 274  Q
    ||||| |||||||||||||||||||||||||| || |||| | || | |||||| ||| |||||| |||||||| ||| |||| ||||||||  ||   |    
T  2382786 gtcaattttttcatctttttggacaaagctcgcaatccatttatatggattttgaagaggttggagagaatgagtgatttgagatctaaaggtgaaacag 2382687  T
Q  275 agatttggg-taagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttgga 373  Q
    |||||| |  |||||||||||||| ||| ||||| ||||||||||| | ||||||||  |||||||| |||||||||||||||||||| || || | |||    
T  2382686 agattttgcataagaagcgtgttgaggtaattgtattgagagaagtgagtgaggttgagggatgtgatattgagggatgtgacattagggagccttcgga 2382587  T
Q  374 agatttgaggaatgaaagggatggt 398  Q
    |||   |||||||||||||||||||    
T  2382586 agaggcgaggaatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 2533992 - 2534124
Alignment:
Q  91 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 190  Q
    |||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||||         ||   ||||||| ||||| || |||||||||||||    
T  2533992 agttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatct 2534091  T
Q  191 ttttggacaaagctcggaacccatctttaggaa 223  Q
    | |||||||||||||||||| ||| || |||||    
T  2534092 tcttggacaaagctcggaactcattttcaggaa 2534124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 2367735 - 2367678
Alignment:
Q  415 atggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagag 472  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||    
T  2367735 atggagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 2621462 - 2621399
Alignment:
Q  161 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaat 224  Q
    ||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||||| |||||||    
T  2621462 aacaagtgagagatgtcaaatttttcatatttttggagaaagctcgcaacccatctgtaggaat 2621399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 2547223 - 2547346
Alignment:
Q  91 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 190  Q
    |||||||||||||||||||| |||||| |||||||||| | ||| |||||| ||||         || | ||||| | ||||| ||||||||||||||||    
T  2547223 agttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatct 2547322  T
Q  191 ttttggacaaagctcggaacccat 214  Q
    |||  ||||||||||| |||||||    
T  2547323 tttcagacaaagctcgcaacccat 2547346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 547
Target Start/End: Complemental strand, 2376289 - 2376160
Alignment:
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagtatagtgatctccatcaaggaatttgatgatgtatt 517  Q
    |||||||||| |  ||||||||||||||| ||   |||||||||||| || |||||||| ||||    ||  || ||  | |||||||||||||||||||    
T  2376289 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggcgaggaatttgatgatgtatt 2376190  T
Q  518 cccacaactcatctggtaaatttgaacaca 547  Q
    |||| ||||||| |||||||| ||||||||    
T  2376189 cccataactcatatggtaaatatgaacaca 2376160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 2525504 - 2525625
Alignment:
Q  161 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtc 260  Q
    ||||||| ||||| |||||||||||||| || ||||||||| | || ||| ||| || |||||  |||  |  || | | ||| |||||||| |||||||    
T  2525504 aacaagtgagagatgtcaaatttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtc 2525603  T
Q  261 taaagggaaagtggagatttgg 282  Q
    ||||||||||||||||||||||    
T  2525604 taaagggaaagtggagatttgg 2525625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 2368032 - 2367923
Alignment:
Q  91 agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcatct 190  Q
    |||||||| ||||||||||| |||||| |||||||||||| |||  ||||||  || |       | || ||||||||||||||||||| |||||||||     
T  2368032 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtgaatactaatcattccggaacaagtaagagaggtcaagtttttcatcc 2367933  T
Q  191 ttttggacaa 200  Q
    ||||||||||    
T  2367932 ttttggacaa 2367923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 12124594 - 12124634
Alignment:
Q  161 aacaagtaagagaggtcaaatttttcatctttttggacaaa 201  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  12124594 aacaagtgagagaggtcaaatttttcatctttttggacaaa 12124634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  161 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcg 206  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 2467294 - 2467423
Alignment:
Q  161 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatctttaggaattttgtagaagttggaaagaatgagcgatctgaggtc 260  Q
    ||||||| || || |||||||||||||||| |||||| |||||||| |||||||||  |||||   |   |  || | | ||| |||| ||| |||||||    
T  2467294 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtc 2467393  T
Q  261 taaagggaaagtggagatttgggtaagaag 290  Q
     ||||||||||||||||||| |||||||||    
T  2467394 caaagggaaagtggagattttggtaagaag 2467423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 2486064 - 2486101
Alignment:
Q  169 agagaggtcaaatttttcatctttttggacaaagctcg 206  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  2486064 agagatgtcaaatttttcatctttttggacaaagctcg 2486101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 2376439 - 2376407
Alignment:
Q  254 tgaggtctaaagggaaagtggagatttgggtaa 286  Q
    |||||||||||||||||||||||||||||||||    
T  2376439 tgaggtctaaagggaaagtggagatttgggtaa 2376407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 443
Target Start/End: Complemental strand, 2621292 - 2621192
Alignment:
Q  343 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 442  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2621292 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 2621193  T
Q  443 a 443  Q
    |    
T  2621192 a 2621192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 461
Target Start/End: Complemental strand, 1547512 - 1547469
Alignment:
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagac 461  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 2373299 - 2373256
Alignment:
Q  415 atggagaatcggagattgttggtgatggagagtaattgtttgga 458  Q
    ||||||||||||||||  |||||||||||||| |||||||||||    
T  2373299 atggagaatcggagatgattggtgatggagagaaattgtttgga 2373256  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 482
Target Start/End: Original strand, 2460589 - 2460664
Alignment:
Q  407 tgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagt 482  Q
    |||||||||  ||||||||||||   |||||||||||||| || ||||||||||| || || ||||| ||||||||    
T  2460589 tgattttgagagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagatttgaaagt 2460664  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 461
Target Start/End: Original strand, 12126879 - 12126926
Alignment:
Q  414 gatggagaatcggagattgttggtgatggagagtaattgtttggagac 461  Q
    |||||||||| |||||  ||||||||||||||| ||||||||||||||    
T  12126879 gatggagaataggagacggttggtgatggagagaaattgtttggagac 12126926  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 2373529 - 2373488
Alignment:
Q  160 aaacaagtaagagaggtcaaatttttcatctttttggacaaa 201  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  2373529 aaacaagtgagagaggtcaaatatttcatcttttcggacaaa 2373488  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 6007668 - 6007713
Alignment:
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagacga 463  Q
    |||||||||||| |||||||||||||||| || ||||| |||||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacga 6007713  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 12124522 - 12124563
Alignment:
Q  89 caagttcttcaagtaaagggaagcaatcaacaatgaagaaga 130  Q
    |||||||||| ||||||||||| |||||| ||||||||||||    
T  12124522 caagttcttctagtaaagggaaacaatcagcaatgaagaaga 12124563  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 2382877 - 2382813
Alignment:
Q  75 tgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttct 139  Q
    ||||||||||||||| ||| | || ||||||||||||||||   |||||||  ||||||||||||    
T  2382877 tgtttccttgagaacgagtacatcgagtaaagggaagcaattggcaatgaaatagatatccttct 2382813  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 2393885 - 2393829
Alignment:
Q  169 agagaggtcaaattttt-catctttttggacaaagctcggaacccatctttaggaat 224  Q
    ||||| ||||||||||| |||||||| |||||||||||| ||||||| |||| ||||    
T  2393885 agagatgtcaaattttttcatcttttgggacaaagctcgcaacccatttttatgaat 2393829  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 2477421 - 2477465
Alignment:
Q  247 agcgatctgaggtctaaagggaaagtggagatttgggtaagaagc 291  Q
    |||||||||||||||| ||  |||||||| |||||||||||||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagc 2477465  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 2625628 - 2625588
Alignment:
Q  91 agttcttcaagtaaagggaagcaatcaacaatgaagaagat 131  Q
    |||||||| ||||||||||| ||||||||||| ||||||||    
T  2625628 agttcttcgagtaaagggaaacaatcaacaataaagaagat 2625588  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 12126658 - 12126690
Alignment:
Q  169 agagaggtcaaatttttcatctttttggacaaa 201  Q
    |||||||||||||||||||||| ||||||||||    
T  12126658 agagaggtcaaatttttcatctgtttggacaaa 12126690  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 358 - 482
Target Start/End: Complemental strand, 15838079 - 15837955
Alignment:
Q  358 ttagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttgg 457  Q
    |||| ||||| ||||||||  | ||||||||||||||| ||||| |   ||||||||| |||||||||||||  ||||||||||||||| || |||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  458 agacgatagaaagagacttgaaagt 482  Q
    |||| || || || |||||||||||    
T  15837979 agaccatcgagagggacttgaaagt 15837955  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Original strand, 9581951 - 9581998
Alignment:
Q  432 gttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 479  Q
    ||||||||| ||||| || ||||||||||||| |||||||||||||||    
T  9581951 gttggtgatagagagaaactgtttggagacgacagaaagagacttgaa 9581998  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 479
Target Start/End: Original strand, 9587510 - 9587556
Alignment:
Q  433 ttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 479  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||||    
T  9587510 ttggtgacggagagaaactgtttggagacgacagaaagagacttgaa 9587556  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 513490 - 513446
Alignment:
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagacg 462  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  513490 gagaatcggagattgttggtgatggagagtaactgttttgagacg 513446  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 418 - 463
Target Start/End: Original strand, 32152209 - 32152254
Alignment:
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagacga 463  Q
    |||||||||||| |||||||||||||||| || |||||||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacga 32152254  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 39516859 - 39516924
Alignment:
Q  417 ggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagt 482  Q
    |||||||| ||||  ||||||||||| ||| |||||| |||||||||| || ||||||||||||||    
T  39516859 ggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagt 39516924  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 10578857 - 10578802
Alignment:
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagaga 473  Q
    |||||| ||||| ||||||| |||||||| |||||||||||||||| ||| |||||    
T  10578857 gagaataggagactgttggttatggagaggaattgtttggagacgagagatagaga 10578802  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 32268773 - 32268819
Alignment:
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagacgat 464  Q
    |||||||| |||  |||||||||||||||||| ||||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgat 32268819  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 41900312 - 41900267
Alignment:
Q  418 gagaatcggagattgttggtgatggagagtaattgtttggagacga 463  Q
    |||||||| ||| |||||||||||||||| || |||||||||||||    
T  41900312 gagaatcgaagagtgttggtgatggagagaaactgtttggagacga 41900267  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 41900553 - 41900496
Alignment:
Q  156 ttcgaaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 213  Q
    |||| ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  41900553 ttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 41900496  T

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