View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_high_6 (Length: 367)
Name: NF12299_high_6
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 21115965 - 21115617
Alignment:
| Q |
1 |
gccatgcatcttcacagaaccaggcatcaataaacaagaatctaagagtttgtttatgtctgcttgaatcaacctcctcattgattgtaacgataatctt |
100 |
Q |
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||||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| || |
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| T |
21115965 |
gccatgcatcttcacagaaccaggcgtgaacaaacaagaatcgaagagtttgtttatgtctgcttgaatcaagctcctcattgactgtaatgataatttt |
21115866 |
T |
|
| Q |
101 |
tctcccgcacctagtccaaatgcatacctcatcaaatcttctgttggtatgtgatagtcttctggaaaaagagtacacatcattaagagcaattgtgcgt |
200 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||| || |
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| T |
21115865 |
tctcccatacctagtccaaatgcaaacctcatcaaatcttctgttgggatgtgatagtcttctggaaaaagagtacaaatcattaagagtagctgtgtgt |
21115766 |
T |
|
| Q |
201 |
gctgcctttgcaaataatcatagcttaatttaaggcaacttaaagtagtccttactcctccttcatcattagatgcttttgaatccctcaacttatcaaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| || |
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| T |
21115765 |
actgcctttgcaaataatcatagcttaatttaaggcaacttaaagtagtcctcactcctccttcatcattggatgcctttgaatccctcaacttatctaa |
21115666 |
T |
|
| Q |
301 |
cgcctgctgccacaactcaatttcatgccttccttttaaggacgaccct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21115665 |
cgcctgctgccacaactcaatttcatgccttccttttaaggacgaccct |
21115617 |
T |
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