View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12299_low_1 (Length: 959)
Name: NF12299_low_1
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 711; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 1 - 951
Target Start/End: Original strand, 21115941 - 21116891
Alignment:
| Q |
1 |
gcctggttctgtgaagatgcatggcatggttcgtgagacagtcttatggattgcaaatacatcagataattgcaaaatcttggtaaatgttgacaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21115941 |
gcctggttctgtgaagatgcatggcatggttcgtgagacagtcttatggattgcaaatacatcagataattgcaaaatcttggtaaatgttgacaaacca |
21116040 |
T |
|
| Q |
101 |
cttagcactttagcagaggataacaaaataagagaatgttttacattatcctcatggtggtataatgaaaatcccaccttttgtcaattgcatgctccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21116041 |
cttagcactttagcagaggataacaaaataagagaatgttttacattatcctcatggtggtataatgaaaatcccaccttttgtcaattgcatgctccaa |
21116140 |
T |
|
| Q |
201 |
atcttaaaatgttatttgtaaatataagtgctcgtgaatcattgaatttcttggatttatcgcatttaacatttgaaggagtacaagggcttgaggtact |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21116141 |
atcttaaaatgttattggtaaatataagtgctcgtgaatcattgaatttcttggatttatcacatttaacatttgaaggagtacaagggcttgaggtact |
21116240 |
T |
|
| Q |
301 |
ttcaataaccattgataacaaaaaagtaccagtatcattttctccatccatccagttgttgacaaatgttcgaactttgcgcttaaatggattgaagttt |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21116241 |
ttcaataaccattgataacaaaatagtaccagtatcattttctccatccatccagttgttgacaaatgttcgaactttgcgcttaaatggattgaaattg |
21116340 |
T |
|
| Q |
401 |
ggtgacatttctttcattggaagcttaacaagcctcgaggttcttgacttgagacgttgcaacttcaatgaacttcctatcgaaataggaaaactcctaa |
500 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
21116341 |
gatgacatttctttcatcggaagcttaacaagcattgaggttcttgacttgagacgttgtcacttcaatggacttcctatcgaaataggaaaactcataa |
21116440 |
T |
|
| Q |
501 |
gccttaaattgctagatttttcagagtgtcatatttctgaatatgactataatgaagcaatagggaaatgttcacaacttgaggagttatatgcttcagc |
600 |
Q |
| |
|
| ||||| ||||||||||| ||||| |||| ||||||| | | |||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21116441 |
gtcttaagttgctagatttgtcagaatgtcgtatttctcgaaacagctataatggagcaatagggaaatgttcacaactagaggagttatatgcttcagc |
21116540 |
T |
|
| Q |
601 |
atgttacccagaaaagtatgttcatgagatcattattgatattggtattctctcaaatctacaaaggtttgtatttgacaatcaaatccttcaggaaata |
700 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| | ||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||| | |
|
|
| T |
21116541 |
atgttacccagaaaagcatgttcctgagatcattctggatattggtattctcgtaaatctacaaagctttgtacttgatgatcaaatccttcaggaaaga |
21116640 |
T |
|
| Q |
701 |
aggagagttctacaattaaaagattttaatatctcaaagttgaggacatctaagaaaaatattctgcaaatagctgaaaatatttctttgaaaggccttc |
800 |
Q |
| |
|
|||||||| |||| | |||||| |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
21116641 |
aggagagtcctacgagtaaaaggttttaatacatcaaggttgaagacatctaagaaaaatattctgcaaatagctgaagttatttctttggaagctcttc |
21116740 |
T |
|
| Q |
801 |
atggaggatgtaaaaatataatcccagatatggttggagttgtgggaggcatgaatgatttgacttctctccatcttaaaagttgccaagagatagaatg |
900 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
21116741 |
atggaggatgtaaaaatattatcccagatatggttggagttgtaggaggcatggatgatttgacttctctccatcttacaagatgccaagatatagaatg |
21116840 |
T |
|
| Q |
901 |
catctttgatgcaacctatgatttcaaggaagatgatttgcttcacaggtt |
951 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
21116841 |
catcttcgatgcaacctatgatttcagggaagatgatttgattcccaggtt |
21116891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 11 - 951
Target Start/End: Original strand, 21123378 - 21124318
Alignment:
| Q |
11 |
gtgaagatgcatggcatggttcgtgagacagtcttatggattgcaaatacatcagataattgcaaaatcttggtaaatgttgacaaaccacttagcactt |
110 |
Q |
| |
|
||||||||||||| ||||||||| || |||| ||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| | |
|
|
| T |
21123378 |
gtgaagatgcatgacatggttcgcgacacagccttatggatcgcaaatagatcaaataattgtaaaatcttggtaaatgttgacaaaccactcagcattg |
21123477 |
T |
|
| Q |
111 |
tagcagaggataacaaaataagagaatgttttacattatcctcatggtggtataatgaaaatcccaccttttgtcaattgcatgctccaaatcttaaaat |
210 |
Q |
| |
|
| ||||| ||||| || |||||||| |||||| || |||| ||||||||| | ||| |||||||| ||||||| |||||||||||| ||||||||||| |
|
|
| T |
21123478 |
tggcagaagataaaaatataagagattgttttgcagtatcttcatggtgggagaataaaaatccctttttttgtccattgcatgctcctaatcttaaaat |
21123577 |
T |
|
| Q |
211 |
gttatttgtaaatataagtgctcgtgaatcattgaatttcttggatttatcgcatttaacatttgaaggagtacaagggcttgaggtactttcaataacc |
310 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
21123578 |
gctattgctaaatataagtgctcgtccatcattgaattccttggatttatcgcatttaacatttgaaggaatacaagggcttgaggtattttctttaacc |
21123677 |
T |
|
| Q |
311 |
attgataacaaaaaagtaccagtatcattttctccatccatccagttgttgacaaatgttcgaactttgcgcttaaatggattgaagtttggtgacattt |
410 |
Q |
| |
|
||||| ||| | ||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21123678 |
gttgattacagagtagtaccaatatcattttctccatcaatccaactgttgaaaaatgttcgaactttgcgcttaaatggattgaactttggtgacattt |
21123777 |
T |
|
| Q |
411 |
ctttcattggaagcttaacaagcctcgaggttcttgacttgagacgttgcaacttcaatgaacttcctatcgaaataggaaaactcctaagccttaaatt |
510 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
21123778 |
ctgtcattggaagcttaacaagccttgaggttcttgacttgagacgttgtaacttcaatgaacttcctatcgaaataggaaaactaataagccttaagtt |
21123877 |
T |
|
| Q |
511 |
gctagatttttcagagtgtcatatttctgaatatgactataatgaagcaatagggaaatgttcacaacttgaggagttatatgcttcagcatgttaccca |
610 |
Q |
| |
|
||| ||||| |||||||||| |||||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
21123878 |
gctggatttatcagagtgtcgtatttctgaaaacaactataatggagcaatagggaaatgttcacaactagaggagttatatgcttcaacatgttaccca |
21123977 |
T |
|
| Q |
611 |
gaaaagtatgttcatgagatcattattgatattggtattctctcaaatctacaaaggtttgtatttgacaatcaaatccttcaggaaataaggagagttc |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21123978 |
gaaaagtatgttcatgagatcattattgatattggtattctctcaaatctacaaaggtttgtatttgacaatcaaatccttcaggaaataaggagagttc |
21124077 |
T |
|
| Q |
711 |
tacaattaaaagattttaatatctcaaagttgaggacatctaagaaaaatattctgcaaatagctgaaaatatttctttgaaaggccttcatggaggatg |
810 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
21124078 |
taaaattaaaagattttaatatctcaaagttgaggacatctaagaaaaatattctgcaaatagctgaaaatatttctttggaagggcttcatggaggatg |
21124177 |
T |
|
| Q |
811 |
taaaaatataatcccagatatggttggagttgtgggaggcatgaatgatttgacttctctccatcttaaaagttgccaagagatagaatgcatctttgat |
910 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||| |
|
|
| T |
21124178 |
taaaaatataatcccagatatggttggaattgtgggaggcatgaatgatttgacttctctccatcttacaagttgccaagaaatagaatgtatcttcgat |
21124277 |
T |
|
| Q |
911 |
gcaacctatgatttcaaggaagatgatttgcttcacaggtt |
951 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
21124278 |
gcaacctatgatttcaaggaagatgatttgattcccaggtt |
21124318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 264 - 477
Target Start/End: Complemental strand, 21714747 - 21714531
Alignment:
| Q |
264 |
atttaacatttgaaggagtacaagggcttgaggtactttcaataaccattgataacaaaa---aagtaccagtatcattttctccatccatccagttgtt |
360 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||| |||| |||||| |||| ||| | |||||| | | ||||| ||||||| ||||| |||| |
|
|
| T |
21714747 |
atttaacatttgaaggaatagaagggctcaaggtattttctctaaccaatgattccaatagtgaagtactattctcattgcctccatcaatccaaatgtt |
21714648 |
T |
|
| Q |
361 |
gacaaatgttcgaactttgcgcttaaatggattgaagtttggtgacatttctttcattggaagcttaacaagcctcgaggttcttgacttgagacgttgc |
460 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||||||| ||| |||||||||| || | |||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
21714647 |
gacaaatgttcgaactctgcgcttgaatgggttgaagttgggtaacatttcttttatagcaagcttaacaaggctcgaggttcttgacttgcgacattgt |
21714548 |
T |
|
| Q |
461 |
aacttcaatgaacttcc |
477 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21714547 |
gacttcaatgaacttcc |
21714531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 758 - 870
Target Start/End: Complemental strand, 21714226 - 21714114
Alignment:
| Q |
758 |
aatattctgcaaatagctgaaaatatttctttgaaaggccttcatggaggatgtaaaaatataatcccagatatggttggagttgtgggaggcatgaatg |
857 |
Q |
| |
|
|||||||| |||||| |||||||| || |||| | | |||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
21714226 |
aatattctacaaatatctgaaaatgttgcttttacacgcctccatggaggatgtaaaaatatcatcccagacatggttgaagttgtgggaggcatgaatg |
21714127 |
T |
|
| Q |
858 |
atttgacttctct |
870 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
21714126 |
atttaacttctct |
21714114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 758 - 906
Target Start/End: Original strand, 21705281 - 21705429
Alignment:
| Q |
758 |
aatattctgcaaatagctgaaaatatttctttgaaaggccttcatggaggatgtaaaaatataatcccagatatggttggagttgtgggaggcatgaatg |
857 |
Q |
| |
|
||||| || |||| |||||||| | || |||| || |||| |||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
21705281 |
aatatcctacaaaaagctgaaagtgttgcttttcaatgcctccatggaggatgtaaaaatatcatcccagacatggttgaagttgtgggaggtatgaatg |
21705380 |
T |
|
| Q |
858 |
atttgacttctctccatcttaaaagttgccaagagatagaatgcatctt |
906 |
Q |
| |
|
|||| |||||||| ||| ||| |||| ||||||||||||||||||| |
|
|
| T |
21705381 |
atttaacttctctatggcttgaaacttgcgaagagatagaatgcatctt |
21705429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 362 - 478
Target Start/End: Original strand, 21704873 - 21704989
Alignment:
| Q |
362 |
acaaatgttcgaactttgcgcttaaatggattgaagtttggtgacatttctttcattggaagcttaacaagcctcgaggttcttgacttgagacgttgca |
461 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||| | |||||||||||| | | || ||||||| || ||||||||| |||| ||||||| | |
|
|
| T |
21704873 |
acaaatgttcgaactctgcgcttgaatgggttgaagttagatgacatttcttttgtagcaaagttaacaatgcttgaggttcttctcttgcgacgttgta |
21704972 |
T |
|
| Q |
462 |
acttcaatgaacttcct |
478 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
21704973 |
agttcaatgaacttcct |
21704989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 23009902 - 23009802
Alignment:
| Q |
11 |
gtgaagatgcatggcatggttcgtgagacagtcttatggattgcaaatacatcagataattgcaaaatcttggtaaatgttgacaaaccacttagcactt |
110 |
Q |
| |
|
||||||||||||| || |||||||| |||| ||||||||||||||| | |||||| ||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
23009902 |
gtgaagatgcatgacacagttcgtgacacagccttatggattgcaaagagatcagacaataacaaaattgtggtaaatgttgacaaaccaattagcactt |
23009803 |
T |
|
| Q |
111 |
t |
111 |
Q |
| |
|
| |
|
|
| T |
23009802 |
t |
23009802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 597
Target Start/End: Complemental strand, 23009364 - 23009313
Alignment:
| Q |
546 |
actataatgaagcaatagggaaatgttcacaacttgaggagttatatgcttc |
597 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
23009364 |
actataatggagcaatagggaaatgttcacagttggaagagttatatgcttc |
23009313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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