View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12299_low_11 (Length: 325)

Name: NF12299_low_11
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12299_low_11
NF12299_low_11
[»] chr6 (12 HSPs)
chr6 (18-211)||(24188144-24188337)
chr6 (239-310)||(24187977-24188048)
chr6 (111-211)||(28585943-28586042)
chr6 (223-310)||(23088086-23088173)
chr6 (149-213)||(28589337-28589401)
chr6 (105-213)||(9726103-9726211)
chr6 (231-311)||(9386334-9386414)
chr6 (244-308)||(28585781-28585845)
chr6 (272-310)||(15613902-15613940)
chr6 (161-211)||(23088247-23088297)
chr6 (273-314)||(28589219-28589260)
chr6 (159-211)||(17729287-17729339)
[»] chr1 (9 HSPs)
chr1 (114-213)||(6501463-6501561)
chr1 (149-213)||(24267692-24267756)
chr1 (92-140)||(24306289-24306337)
chr1 (99-196)||(17837592-17837687)
chr1 (96-143)||(26540967-26541014)
chr1 (244-310)||(6501301-6501367)
chr1 (244-310)||(27117466-27117532)
chr1 (244-309)||(26810158-26810223)
chr1 (92-214)||(27117627-27117749)
[»] chr7 (25 HSPs)
chr7 (113-211)||(10937691-10937788)
chr7 (92-214)||(18466073-18466194)
chr7 (93-204)||(16306763-16306874)
chr7 (95-213)||(5797582-5797699)
chr7 (99-213)||(9864237-9864350)
chr7 (99-196)||(9500519-9500616)
chr7 (24-213)||(21912390-21912581)
chr7 (248-311)||(10937876-10937939)
chr7 (223-314)||(21884902-21884993)
chr7 (99-198)||(16224062-16224161)
chr7 (149-213)||(18449660-18449724)
chr7 (118-198)||(36117473-36117552)
chr7 (89-143)||(9916631-9916685)
chr7 (232-310)||(9916797-9916875)
chr7 (89-143)||(9924543-9924597)
chr7 (232-310)||(9924709-9924787)
chr7 (244-310)||(13707767-13707833)
chr7 (230-307)||(20174838-20174915)
chr7 (241-315)||(2454034-2454108)
chr7 (232-310)||(5797783-5797861)
chr7 (249-310)||(8937985-8938047)
chr7 (265-314)||(18466310-18466359)
chr7 (231-296)||(33035754-33035819)
chr7 (22-78)||(9130902-9130958)
chr7 (92-140)||(9721024-9721072)
[»] chr5 (12 HSPs)
chr5 (112-211)||(29263494-29263592)
chr5 (105-213)||(28142446-28142554)
chr5 (145-214)||(28253410-28253480)
chr5 (223-309)||(32448225-32448310)
chr5 (110-214)||(15544136-15544239)
chr5 (93-213)||(23265223-23265343)
chr5 (244-293)||(17185746-17185795)
chr5 (160-213)||(26307748-26307801)
chr5 (230-311)||(28142635-28142716)
chr5 (249-310)||(28278746-28278807)
chr5 (266-310)||(112375-112419)
chr5 (249-297)||(18223306-18223354)
[»] chr8 (9 HSPs)
chr8 (99-196)||(15238874-15238971)
chr8 (223-314)||(24119505-24119596)
chr8 (170-213)||(17965189-17965232)
chr8 (114-192)||(5052856-5052931)
chr8 (92-213)||(14075662-14075783)
chr8 (113-196)||(24904722-24904805)
chr8 (249-309)||(28847208-28847268)
chr8 (256-311)||(31288602-31288657)
chr8 (159-213)||(5851074-5851128)
[»] chr3 (8 HSPs)
chr3 (110-206)||(20397671-20397767)
chr3 (100-213)||(8557040-8557152)
chr3 (244-315)||(28729117-28729188)
chr3 (112-205)||(821431-821525)
chr3 (19-131)||(28728937-28729051)
chr3 (160-209)||(23056077-23056126)
chr3 (113-176)||(10918007-10918070)
chr3 (223-299)||(21074287-21074363)
[»] chr4 (13 HSPs)
chr4 (149-213)||(19900703-19900767)
chr4 (92-213)||(1833507-1833628)
chr4 (269-314)||(19900880-19900925)
chr4 (43-213)||(22526381-22526553)
chr4 (92-210)||(9052741-9052860)
chr4 (96-140)||(15050066-15050110)
chr4 (96-140)||(15104314-15104358)
chr4 (150-192)||(3774956-3774998)
chr4 (249-310)||(7611532-7611594)
chr4 (249-315)||(25643771-25643837)
chr4 (117-213)||(9737420-9737514)
chr4 (92-140)||(13587291-13587339)
chr4 (161-213)||(40215230-40215282)
[»] scaffold0019 (2 HSPs)
scaffold0019 (244-309)||(11508-11573)
scaffold0019 (92-140)||(11308-11357)
[»] scaffold0006 (2 HSPs)
scaffold0006 (149-198)||(18664-18713)
scaffold0006 (133-198)||(222957-223023)
[»] chr2 (7 HSPs)
chr2 (149-193)||(30900778-30900822)
chr2 (223-314)||(15454981-15455072)
chr2 (93-174)||(8503018-8503100)
chr2 (92-186)||(9239214-9239304)
chr2 (148-211)||(28770355-28770418)
chr2 (93-213)||(27418435-27418559)
chr2 (281-309)||(32620051-32620079)
[»] scaffold0672 (1 HSPs)
scaffold0672 (114-196)||(1823-1905)
[»] scaffold0394 (1 HSPs)
scaffold0394 (251-310)||(13659-13718)
[»] scaffold0238 (1 HSPs)
scaffold0238 (99-198)||(19185-19285)
[»] scaffold0136 (1 HSPs)
scaffold0136 (170-213)||(15376-15419)
[»] scaffold0128 (1 HSPs)
scaffold0128 (99-192)||(523-615)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 24188337 - 24188144
Alignment:
Q  18 agatttaggcaagtgcatcaagttatttatcaaataagaaagtgtaattagagtattgtatcatgtaaatagtagtttcaactaaataatttgcgttact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||  |||||| |    
T  24188337 agatttaggcaagtgcatcaagttatttatcaaataagaaagtgtaagtagagtattgtatcatgtaaatagtagtttcaactaaacaatccgcgttatt 24188238  T
Q  118 tatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24188237 tatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctgtttgcaacagagcaaagtttatctgttttgattg 24188144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 24188048 - 24187977
Alignment:
Q  239 ttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24188048 ttttttatccaagtgatgagtttattgggttttactacctatcagctgtcgagttgcacctgctgatcacac 24187977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 28586042 - 28585943
Alignment:
Q  111 cgttacttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgatt 210  Q
    |||||||||||||| ||| ||||||  || ||| ||||| ||||||| | |||||||||||||| | ||| |||||||| ||||||||||||||||||||    
T  28586042 cgttacttatttggaaactataaaataaattaaagataa-gggtttagatttttgcaatttaatatgtttacaacagagaaaagtttatctgttttgatt 28585944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 23088173 - 23088086
Alignment:
Q  223 tattcgacttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    ||||| ||||||  |||||  ||| ||||||||||||| || |||||||||||  |||||||| ||| ||||||||||||||||||||    
T  23088173 tattcaacttttgacgtttcctattcaagtgatgagttcatggggttttactacttatcagctatcgtgttgcacctgctgatcacac 23088086  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 28589401 - 28589337
Alignment:
Q  149 aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||||||||| ||||||||||| |||| | |||||||||||| ||||||||  |||||||||||||    
T  28589401 aagggtttagagttttgcaatataatatgtttgcaacagagtaaagtttacatgttttgattgca 28589337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 9726103 - 9726211
Alignment:
Q  105 aatttgcgttacttatttgggaacaata-aaaataaataatgataaagggtttatagttttgc-aatttaatctatttgcaacagagcaaagtttatctg 202  Q
    |||||||||||||||||||||||||| | |||||||| |  ||| ||||||||| |||||||| || ||||| | |||| || |||| |||||||| |||    
T  9726103 aatttgcgttacttatttgggaacaaaataaaataaa-agagat-aagggtttaaagttttgcaaagttaatatgtttggaaaagagaaaagtttacctg 9726200  T
Q  203 ttttgattgca 213  Q
    |||||||||||    
T  9726201 ttttgattgca 9726211  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 9386334 - 9386414
Alignment:
Q  231 ttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacaca 311  Q
    ||||||||| || |||| ||||||||| || || ||||||||||| ||| ||||| || ||||||| || |||||||||||    
T  9386334 ttttagcgtcttctatctaagtgatgaattcatggggttttactacctaccagctttcaagttgcatctactgatcacaca 9386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 28585845 - 28585781
Alignment:
Q  244 tatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcac 308  Q
    |||| |||| |||||||| |  |||||||||| |||||||||||||||||| ||||| |||||||    
T  28585845 tatctaagtaatgagtttgtgaggttttactacctatcagctgtcgagttgaacctgttgatcac 28585781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 15613940 - 15613902
Alignment:
Q  272 actatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  15613940 actacctatcagctgtcaagttgcacctgctgatcacac 15613902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 23088297 - 23088247
Alignment:
Q  161 ttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattg 211  Q
    |||| ||||||||| | ||||||| ||||||||||||| ||||||||||||    
T  23088297 tttttcaatttaatttgtttgcaatagagcaaagtttacctgttttgattg 23088247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 28589260 - 28589219
Alignment:
Q  273 ctatctatcagctgtcgagttgcacctgctgatcacacaggt 314  Q
    |||||||||| || ||||||||||| ||||||||||||||||    
T  28589260 ctatctatcaactatcgagttgcacatgctgatcacacaggt 28589219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 17729287 - 17729339
Alignment:
Q  159 agttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattg 211  Q
    |||||| ||||||||||||||||||||||| ||| |||||   ||||||||||    
T  17729287 agttttacaatttaatctatttgcaacagaacaatgtttactagttttgattg 17729339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 6501561 - 6501463
Alignment:
Q  114 tacttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||||||||||||| |||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  6501561 tacttatttgggagcaataaaa-taaataaagatgaagggtttagagttttgcaatttaatctatttgaaacatagcaaagtttagctgttttaattgca 6501463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 24267756 - 24267692
Alignment:
Q  149 aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||||||||| |||||||||||||||| | |||||||||||||||| ||||  |||||||||||||    
T  24267756 aagggtttagagttttgcaatttaatatgtttgcaacagagcaaaatttacttgttttgattgca 24267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 24306337 - 24306289
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaataaaaataaa 140  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  24306337 gtttcaaccaaataattcgcgttacttatttgagaacaataaaaataaa 24306289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 17837592 - 17837687
Alignment:
Q  99 ctaaataatttgcgttacttatttgggaacaata-aaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtt 196  Q
    ||||| |||| ||||||||||||||||||||| | |||||||| |  ||| ||||| ||| |||||||||||||||| | ||||||| |||||||||||    
T  17837592 ctaaacaattcgcgttacttatttgggaacaaaataaaataaaga--gat-aagggcttagagttttgcaatttaatatgtttgcaatagagcaaagtt 17837687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 26540967 - 26541014
Alignment:
Q  96 caactaaataatttgcgttacttatttgggaacaataaaaataaataa 143  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||||    
T  26540967 caactagacaatttgcgttacttatttgggagcaataaaaataaataa 26541014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 6501367 - 6501301
Alignment:
Q  244 tatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    |||| ||||||||| || || || |||||||| ||||||| ||||||||||||||| ||||||||||    
T  6501367 tatctaagtgatgaattcatgggattttactacctatcagatgtcgagttgcacctactgatcacac 6501301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 27117532 - 27117466
Alignment:
Q  244 tatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    |||| |||| |||||||| | ||||||||||| ||||||| |||| | |||||||||||||||||||    
T  27117532 tatctaagtaatgagtttgtggggttttactacctatcagttgtcaaattgcacctgctgatcacac 27117466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 26810158 - 26810223
Alignment:
Q  244 tatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcaca 309  Q
    |||| |||||||||||| || ||||||||||| ||||| |||||| |||| |||||| ||||||||    
T  26810158 tatctaagtgatgagttcatggggttttactacctatcggctgtcaagttacacctgttgatcaca 26810223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 27117749 - 27117627
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaata-aaaataaataatgataaagggtttatagttttgcaat-ttaatctatttgcaacagag 189  Q
    |||||||| ||| ||| ||||||||||||| |||||||| | ||||||||  | ||||| |||||||  |||||| ||  |||||| |||||||||||||    
T  27117749 gtttcaaccaaacaatctgcgttacttattagggaacaaaataaaataaacga-gataa-gggtttagtgttttgaaaagttaatcaatttgcaacagag 27117652  T
Q  190 caaagtttatctgttttgattgcaa 214  Q
     ||| |||| |||||||||||||||    
T  27117651 aaaattttacctgttttgattgcaa 27117627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 10937691 - 10937788
Alignment:
Q  113 ttacttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattg 211  Q
    ||||||||||| |||||| |||||||||||| ||||| ||||||| ||||||| |||||||| | |||||| |||||||||||||||||||||||||||    
T  10937691 ttacttatttgagaacaacaaaaataaataaagataa-gggtttagagttttgtaatttaatttgtttgcagcagagcaaagtttatctgttttgattg 10937788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 18466073 - 18466194
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagca 191  Q
    |||||| | ||| |||||| |||||||||||||||||||||||| ||||||| |   ||||||||| |||||||||||||||| ||||||||||||| ||    
T  18466073 gtttcagccaaacaatttgtgttacttatttgggaacaataaaa-taaataaaggataagggtttagagttttgcaatttaatttatttgcaacagatca 18466171  T
Q  192 aagtttatctgttttgattgcaa 214  Q
    ||||||| || |||| |||||||    
T  18466172 aagtttacctattttaattgcaa 18466194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 16306763 - 16306874
Alignment:
Q  93 tttcaactaaataatttgcgttacttatttgggaacaataaaaataaataatgataaa-gggtttatagttttgcaatttaatctatttgcaacagagca 191  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||| ||||||| || | | ||||||| ||||||| |||||||| ||||| ||||||||||    
T  16306763 tttcatctaaacaatttgcattacttatttgggaacaataaaa-taaataaagagatatgggtttagagttttgaaatttaatatatttacaacagagca 16306861  T
Q  192 aagtttatctgtt 204  Q
    ||||||| |||||    
T  16306862 aagtttacctgtt 16306874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 5797582 - 5797699
Alignment:
Q  95 tcaactaaataatttgcgttacttatttgggaacaata-aaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaa 193  Q
    ||||| ||| |||||| ||||||||||||||||||| | |||||||| |  ||| ||||||||| | |||| ||| ||||||||||||||||||||||||    
T  5797582 tcaaccaaacaatttgtgttacttatttgggaacaaaataaaataaa-agagat-aagggtttagattttttcaagttaatctatttgcaacagagcaaa 5797679  T
Q  194 gtttatctgttttgattgca 213  Q
    ||||| ||||||||||||||    
T  5797680 gtttacctgttttgattgca 5797699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 9864350 - 9864237
Alignment:
Q  99 ctaaataatttgcgttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagttt 197  Q
    ||||| ||||||||||||||||||| ||||||||||| || |||| || | ||||||||| |||||||||||||| ||| ||||||||| ||||||| ||    
T  9864350 ctaaacaatttgcgttacttatttgagaacaataaaa-tatataaagagataagggtttagagttttgcaatttactctgtttgcaacaaagcaaag-tt 9864253  T
Q  198 atctgttttgattgca 213  Q
    | ||||||||||||||    
T  9864252 acctgttttgattgca 9864237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 9500519 - 9500616
Alignment:
Q  99 ctaaataatttgcgttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtt 196  Q
    ||||| |||| || |||||||||| |||||||||||| ||||||| || | ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  9500519 ctaaacaattcgcattacttatttaggaacaataaaa-taaataaagagataagggtttagagtttttcaatttaatctatttgcaacagagcaaagtt 9500616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 21912581 - 21912390
Alignment:
Q  24 aggcaagtgcatcaagttatttatcaaataagaaagtg-taattagagtattgtatc-atgtaaatagtagtttcaactaaataatttgcgttacttatt 121  Q
    ||||||||| ||||| || |||||||||||| |||||| ||| | |||||| ||||| | |   || || |||||||| ||| |||   |||||||||||    
T  21912581 aggcaagtgtatcaaattgtttatcaaataataaagtgataagttgagtatcgtatctacggggattgtcgtttcaacaaaacaatccacgttacttatt 21912482  T
Q  122 tgggaacaata-aaaataaataatgataaagggtttatagttttgcaat-ttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||| ||||| | ||||||||| | ||||| ||||||| ||||||||||  |||||||||||||||||||||||||||||  |||||||||||||    
T  21912481 tggaaacaaaataaaataaatga-gataa-gggtttagagttttgcaaagttaatctatttgcaacagagcaaagtttacatgttttgattgca 21912390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 10937876 - 10937939
Alignment:
Q  248 caagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacaca 311  Q
    |||||||||||||| ||||| |||||||||||||| ||||| |||| |||||||||||||||||    
T  10937876 caagtgatgagtttgttggggtttactatctatcaactgtcaagttacacctgctgatcacaca 10937939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 21884993 - 21884902
Alignment:
Q  223 tattcgacttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacacaggt 314  Q
    ||||| |||||||  ||||  ||| ||||||| |||||||  ||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  21884993 tattcaacttttaaagtttcctattcaagtgacgagtttacggggttttactgcctatcagctgtctagttgcacctgctgatcacacaggt 21884902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 16224161 - 16224062
Alignment:
Q  99 ctaaataatttgcgttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagttt 197  Q
    ||||| ||||||| |||||||||||||||||| |||| ||||||| || | |||||| || ||||||  |||||||| | ||||||||||||||||||||    
T  16224161 ctaaacaatttgcattacttatttgggaacaacaaaa-taaataaagagataagggtgtagagtttttaaatttaatatgtttgcaacagagcaaagttt 16224063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 18449660 - 18449724
Alignment:
Q  149 aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||||||||  |||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  18449660 aagggttttgagtttttcaatttaatctatttgcaacagatcaatgtttacctgttttgattgca 18449724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 36117552 - 36117473
Alignment:
Q  118 tatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagttta 198  Q
    |||||||||||| ||||||||||||| ||| | || | || |||||||||||||||| | ||||||||||| |||||||||    
T  36117552 tatttgggaacagtaaaaataaataaagatga-ggatgtagagttttgcaatttaatttgtttgcaacagaacaaagttta 36117473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 9916631 - 9916685
Alignment:
Q  89 gtagtttcaactaaataatttgcgttacttatttgggaacaataaaaataaataa 143  Q
    ||||||||||| ||| ||| || |||||||||||||||||||| |||||||||||    
T  9916631 gtagtttcaaccaaacaatatgtgttacttatttgggaacaattaaaataaataa 9916685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 9916797 - 9916875
Alignment:
Q  232 tttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    |||| |||| |||||| ||||||||||||  | ||||||||||| |||| ||||||||||||| || |||| |||||||    
T  9916797 tttatcgttatttatctaagtgatgagttattggggttttactacctattagctgtcgagttgtacatgctaatcacac 9916875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 9924543 - 9924597
Alignment:
Q  89 gtagtttcaactaaataatttgcgttacttatttgggaacaataaaaataaataa 143  Q
    ||||||||||| ||| ||| || |||||||||||||||||||| |||||||||||    
T  9924543 gtagtttcaaccaaacaatatgtgttacttatttgggaacaattaaaataaataa 9924597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 9924709 - 9924787
Alignment:
Q  232 tttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    |||| |||| |||||| ||||||||||||  | ||||||||||| |||| ||||||||||||| || |||| |||||||    
T  9924709 tttatcgttatttatctaagtgatgagttattggggttttactacctattagctgtcgagttgtacatgctaatcacac 9924787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 13707767 - 13707833
Alignment:
Q  244 tatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    |||| ||||||||||||  | ||||||||||| |||||||||||| |||||||| || |||||||||    
T  13707767 tatctaagtgatgagttcgtggggttttactacctatcagctgtcaagttgcacatgttgatcacac 13707833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 20174838 - 20174915
Alignment:
Q  230 cttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatca 307  Q
    ||||||| |||||||||| ||||||||||||  | ||||||||||| ||| ||| |||| ||||||| ||||| ||||    
T  20174838 cttttagtgttttttatctaagtgatgagttggtggggttttactacctaccagatgtcaagttgcatctgctaatca 20174915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 2454034 - 2454108
Alignment:
Q  241 ttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacacaggtt 315  Q
    ||||||| ||||||||||||| | ||||||||||| |||||| || |  |||| ||||| |||||||||| ||||    
T  2454034 ttttatctaagtgatgagtttgtggggttttactacctatcaactatgaagtttcacctactgatcacacgggtt 2454108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 5797783 - 5797861
Alignment:
Q  232 tttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    |||| |||| |||||| | |||||||||| ||  | ||||||||||| || |||||| |||||||||||||| ||||||    
T  5797783 tttatcgttatttatctaggtgatgagttcatgcgattttactatctgtcggctgtcaagttgcacctgctggtcacac 5797861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 8938047 - 8937985
Alignment:
Q  249 aagtgatgagtttattgggttttactatc-tatcagctgtcgagttgcacctgctgatcacac 310  Q
    ||||||||||||  | |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  8938047 aagtgatgagttcgtggggttttattatcctaccagctgtcgagttgcacctactgatcacac 8937985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 18466310 - 18466359
Alignment:
Q  265 gggttttactatctatcagctgtcgagttgcacctgctgatcacacaggt 314  Q
    ||||||||||| ||||||| | |||||||||||| ||||||||| |||||    
T  18466310 gggttttactacctatcagttatcgagttgcacccgctgatcacccaggt 18466359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 33035754 - 33035819
Alignment:
Q  231 ttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgca 296  Q
    |||||||||||| |||| ||||||||| ||| | ||||||||||| ||| ||||| || |||||||    
T  33035754 ttttagcgttttctatctaagtgatgattttgtggggttttactacctaccagctatcaagttgca 33035819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 9130902 - 9130958
Alignment:
Q  22 ttaggcaagtgcatcaagttatttatcaaataagaaagtgtaattagagtattgtat 78  Q
    ||||||||||| ||||| || |||||||| ||| ||||||||| || ||||||||||    
T  9130902 ttaggcaagtgtatcaaattgtttatcaagtaataaagtgtaagtatagtattgtat 9130958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 9721024 - 9721072
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaataaaaataaa 140  Q
    |||||||| ||| |||| |||| |||||||||| |||||||||||||||    
T  9721024 gtttcaaccaaacaattcgcgtcacttatttggaaacaataaaaataaa 9721072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 29263592 - 29263494
Alignment:
Q  112 gttacttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattg 211  Q
    |||||||||||||||||||||||||||||  | |||| | |||||| |||||||||||||||| | ||||||||| ||||||||||| || |||||||||    
T  29263592 gttacttatttgggaacaataaaaataaaaga-gatataaggtttagagttttgcaatttaatatgtttgcaacaaagcaaagtttacctcttttgattg 29263494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 28142446 - 28142554
Alignment:
Q  105 aatttgcgttacttatttgggaacaataaaaataaataat-gataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgt 203  Q
    |||||| ||||||||||||||||||||| ||||||||||  ||||  ||||||| ||| ||||||||||||||||||||||||||| |||||| | ||||    
T  28142446 aatttgtgttacttatttgggaacaatataaataaataaaagatat-gggtttagagtgttgcaatttaatctatttgcaacagagtaaagttcacctgt 28142544  T
Q  204 tttgattgca 213  Q
     |||| ||||    
T  28142545 cttgactgca 28142554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 28253410 - 28253480
Alignment:
Q  145 gataaagggtttatag-ttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgcaa 214  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  28253410 gataaagggtttagaggttttgcaatttaatctatttgcaacggagaaaagtttacctgttttgattgcaa 28253480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 32448225 - 32448310
Alignment:
Q  223 tattcgacttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcaca 309  Q
    ||||| ||||||||| ||||| ||||  |||||||||| || ||||||||||| |||||| ||||||||||||||||| ||||||||    
T  32448225 tattcaacttttagcatttttgatccg-gtgatgagttcatggggttttactacctatcaactgtcgagttgcacctgttgatcaca 32448310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 15544136 - 15544239
Alignment:
Q  110 gcgttacttatttgggaacaataaaaataaataat-gataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttga 208  Q
    ||||||||||||||| |||||||||| |||||||  ||||| |  |||| |||||||||||||||| | ||||||||| |||||| |||| || ||||||    
T  15544136 gcgttacttatttggaaacaataaaa-taaataaaagataa-gtatttagagttttgcaatttaatttgtttgcaacatagcaaaatttacctattttga 15544233  T
Q  209 ttgcaa 214  Q
    ||||||    
T  15544234 ttgcaa 15544239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 23265223 - 23265343
Alignment:
Q  93 tttcaactaaataatttgcgttacttatttgggaacaataaaaataaataatgataaagggtttatagttttgc-aatttaatctatttgcaacagagca 191  Q
    ||||||| ||| ||||  |||||||||||||||||||||||||||||| |   |||||||| ||| |||||||| || ||||| | ||||||||| ||||    
T  23265223 tttcaaccaaacaattcacgttacttatttgggaacaataaaaataaa-agaaataaagggcttacagttttgcaaagttaatatgtttgcaacaaagca 23265321  T
Q  192 aagtttatctgttttgattgca 213  Q
    | ||| | || |||||||||||    
T  23265322 atgttgacctattttgattgca 23265343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 17185746 - 17185795
Alignment:
Q  244 tatccaagtgatgagtttattgggttttactatctatcagctgtcgagtt 293  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| ||||    
T  17185746 tatccaagtgatgagtttgttggattttactacctatcagctgtcaagtt 17185795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 26307748 - 26307801
Alignment:
Q  160 gttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    |||||||||||| ||||||||||||||||||||  ||||  |||||||||||||    
T  26307748 gttttgcaatttgatctatttgcaacagagcaagatttagttgttttgattgca 26307801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 28142635 - 28142716
Alignment:
Q  230 cttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacaca 311  Q
    |||||||| |||| |||| ||||| ||||||| |  |||||||||| ||||||| | ||||||||||| || ||||||||||    
T  28142635 cttttagcattttctatctaagtggtgagtttgtgaggttttactacctatcagttttcgagttgcacttgttgatcacaca 28142716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 28278746 - 28278807
Alignment:
Q  249 aagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    ||||||||||||| | || ||||| | |||||||| ||||||||||||||| ||||| ||||    
T  28278746 aagtgatgagtttgtgggcttttattttctatcagttgtcgagttgcacctactgataacac 28278807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 112419 - 112375
Alignment:
Q  266 ggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    |||||||||| ||| |||||||| |||| ||||||||||||||||    
T  112419 ggttttactacctaccagctgtcaagttacacctgctgatcacac 112375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 18223306 - 18223354
Alignment:
Q  249 aagtgatgagtttattgggttttactatctatcagctgtcgagttgcac 297  Q
    ||||||||||||| | ||||||||||| |||| |||||| |||||||||    
T  18223306 aagtgatgagtttgtggggttttactacctattagctgttgagttgcac 18223354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 15238874 - 15238971
Alignment:
Q  99 ctaaataatttgcgttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtt 196  Q
    ||||| |||| |||||||||||| |||| |||||||| ||||||| || | |||||||||||||||||||||||||||| ||||||||| |||||||||    
T  15238874 ctaaacaattcgcgttacttattagggatcaataaaa-taaataaagagataagggtttatagttttgcaatttaatctgtttgcaacatagcaaagtt 15238971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 24119596 - 24119505
Alignment:
Q  223 tattcgacttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacacaggt 314  Q
    ||||| |||||||||||||| |||| |||||||||||| || |||||||||||  ||  ||||||| ||||||||||||| |||||||||||    
T  24119596 tattcaacttttagcgttttctatctaagtgatgagttcatcgggttttactacttaatagctgtcaagttgcacctgctaatcacacaggt 24119505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 17965189 - 17965232
Alignment:
Q  170 ttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  17965189 ttaatctatttgcaatagagcaaagtttatctgttttgattgca 17965232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 5052931 - 5052856
Alignment:
Q  114 tacttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaa 192  Q
    ||||||||||||||||| | |||||||||| ||||| ||||||| ||||| |||||||||||| |||||||||||||||    
T  5052931 tacttatttgggaacaaaataaataaataa-gataa-gggtttacagttt-gcaatttaatctgtttgcaacagagcaa 5052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 14075662 - 14075783
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaataaaaataaataa-tgataaagggtttatagttttg-caatttaatctatttgcaacagag 189  Q
    |||||||| ||| ||| |||||||||||||| |||| ||| |||||||||||  ||| ||||||||| |||||||  || ||||| | |||||||||| |    
T  14075662 gtttcaaccaaacaatgtgcgttacttatttaggaataat-aaaataaataagagat-aagggtttagagttttgtaaagttaatatgtttgcaacagtg 14075759  T
Q  190 caaagtttatctgttttgattgca 213  Q
    ||||||||  ||||||||||||||    
T  14075760 caaagtttccctgttttgattgca 14075783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 24904722 - 24904805
Alignment:
Q  113 ttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtt 196  Q
    ||||||||||| ||||||||||| ||||||| || | ||||||||| |||||| ||||||||||| ||||||  |||| ||||||    
T  24904722 ttacttatttgagaacaataaaa-taaataaagaaagaagggtttagagtttttcaatttaatctgtttgcataagagaaaagtt 24904805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 28847208 - 28847268
Alignment:
Q  249 aagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcaca 309  Q
    ||||||||||||||| ||||||||||| |||  ||||||| | |||||| |||||||||||    
T  28847208 aagtgatgagtttatggggttttactacctaaaagctgtcaaattgcacttgctgatcaca 28847268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 31288602 - 31288657
Alignment:
Q  256 gagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacaca 311  Q
    ||||| || ||||||||||| ||||||  |||||||||||||||||||||| ||||    
T  31288602 gagttcatggggttttactacctatcaattgtcgagttgcacctgctgatcgcaca 31288657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 5851074 - 5851128
Alignment:
Q  159 agttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    |||||||||||||||| | |||||||| ||||||| |||| ||||||| ||||||    
T  5851074 agttttgcaatttaatatgtttgcaacggagcaaaatttacctgttttaattgca 5851128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 20397671 - 20397767
Alignment:
Q  110 gcgttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgtttt 206  Q
    |||||||||||||||||||||||||| ||||||| || | || |||||| |||||||||||||||| | |||||||||||||||| |||| |||||||    
T  20397671 gcgttacttatttgggaacaataaaa-taaataaagagataatggtttagagttttgcaatttaatttgtttgcaacagagcaaaatttacctgtttt 20397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 8557152 - 8557040
Alignment:
Q  100 taaataatttgcgttacttatttgggaacaata-aaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagttta 198  Q
    |||| |||||||||||||||||||||||||| | |||||||| || ||||| ||||||| ||||||||||| |||| | |||| |||| || ||||||||    
T  8557152 taaacaatttgcgttacttatttgggaacaaaataaaataaa-aaggataa-gggtttagagttttgcaatataatatgtttgaaacatagtaaagttta 8557055  T
Q  199 tctgttttgattgca 213  Q
     || |||||||||||    
T  8557054 cctcttttgattgca 8557040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 28729117 - 28729188
Alignment:
Q  244 tatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacacaggtt 315  Q
    |||| ||||||||||||  || |||||||||| ||||||| ||||||  ||||| || ||||||||||||||    
T  28729117 tatctaagtgatgagttcgttaggttttactacctatcagatgtcgaaatgcacatgttgatcacacaggtt 28729188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 821525 - 821431
Alignment:
Q  112 gttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttt 205  Q
    |||||||||||||||||||   || ||||||| || | ||  ||||| |||||| ||||||||| | |||||||||||| |||||||| ||||||    
T  821525 gttacttatttgggaacaaattaagtaaataaagagataaaagtttagagtttttcaatttaatatgtttgcaacagagaaaagtttacctgttt 821431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 28728937 - 28729051
Alignment:
Q  19 gatttaggcaagtgcatcaagttatttatcaaataagaaagtg-taattagagtattgtatc-atgtaaatagtagtttcaactaaataatttgcgttac 116  Q
    ||||||||||||||  |||| | ||||||||| ||| |||||| ||| |||||||| ||||| |  || || || |||||||| ||| |||| |||||||    
T  28728937 gatttaggcaagtgtgtcaaataatttatcaagtaataaagtgataagtagagtatcgtatccacatagattgtcgtttcaaccaaacaattcgcgttac 28729036  T
Q  117 ttatttgggaacaat 131  Q
    || ||||||||||||    
T  28729037 ttgtttgggaacaat 28729051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 23056126 - 23056077
Alignment:
Q  160 gttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgat 209  Q
    |||||||||||| |||||||| |||||||||||  |||| ||||||||||    
T  23056126 gttttgcaatttgatctatttacaacagagcaagatttacctgttttgat 23056077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 10918007 - 10918070
Alignment:
Q  113 ttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatct 176  Q
    |||| |||||||||| ||||||| ||||||| |||| ||||||||| ||| ||||||||||||||    
T  10918007 ttacctatttgggaaaaataaaa-taaataaagatataagggtttaaagtcttgcaatttaatct 10918070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 21074363 - 21074287
Alignment:
Q  223 tattcgacttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacct 299  Q
    ||||| |||||||||||||| |||| || |||||||||  | || |||||||| ||| ||||||||  |||||||||    
T  21074363 tattcaacttttagcgttttctatctaaatgatgagttcgtgggattttactacctaccagctgtcaggttgcacct 21074287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 19900703 - 19900767
Alignment:
Q  149 aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  19900703 aagggtttagagttttgcaatttaatctgtttgcaacatagcaaagtttacctgttttgattgca 19900767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 1833628 - 1833507
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaataaaaataaat-aatgataaagggtttatagttttgcaatttaatctatttgcaacagagc 190  Q
    ||||||||| || |||| || |||||||||| |||||||||||||||||| || ||| ||| ||||| ||||| |||||||||||| |||| || || ||    
T  1833628 gtttcaactgaacaattcgcattacttatttaggaacaataaaaataaataaaagat-aagtgtttaaagtttcgcaatttaatctgtttgtaatagcgc 1833530  T
Q  191 aaagtttatctgttttgattgca 213  Q
    |||||||  ||||||||||||||    
T  1833529 aaagttttcctgttttgattgca 1833507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 19900880 - 19900925
Alignment:
Q  269 tttactatctatcagctgtcgagttgcacctgctgatcacacaggt 314  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  19900880 tttactacctatcagctgtcgagttgcacctgctgatcacacaggt 19900925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 22526381 - 22526553
Alignment:
Q  43 tttatcaaataagaaagtg-taattagagtattgtatc-atgtaaatagtagtttcaactaaataatttgcgttacttatttgggaacaataaaaataaa 140  Q
    |||||||||||| |||||| ||| |||||||| ||||| |  | ||| || |||||||| |||  || || ||||||||||||||||| |||||||||||    
T  22526381 tttatcaaataataaagtgataagtagagtatcgtatccacatgaattgtcgtttcaaccaaaccatctgtgttacttatttgggaacgataaaaataaa 22526480  T
Q  141 taatgataaagggtttatagttttgca-atttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
     |  ||| ||| ||||| ||||||||| | ||||| | ||||||||| | ||||||||| ||||||||||||||    
T  22526481 -agagatgaagagtttagagttttgcagagttaatttgtttgcaacaaaacaaagtttacctgttttgattgca 22526553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 9052741 - 9052860
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaataaaaataaataat-gata-aagggtttatagttttgcaatttaatctatttgcaacagag 189  Q
    |||||||| ||| ||||  |||||||||||| |||||||||||| |||||||  || | ||| |||||||||||| ||||||||| | ||||||| ||||    
T  9052741 gtttcaaccaaacaattcacgttacttattttggaacaataaaa-taaataaaagagataagagtttatagttttccaatttaatatgtttgcaatagag 9052839  T
Q  190 caaagtttatctgttttgatt 210  Q
     |||| ||| |||||||||||    
T  9052840 gaaagattaactgttttgatt 9052860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 15050110 - 15050066
Alignment:
Q  96 caactaaataatttgcgttacttatttgggaacaataaaaataaa 140  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  15050110 caactagacaatttgcgttacttatttgggaacaataaaaataaa 15050066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 15104314 - 15104358
Alignment:
Q  96 caactaaataatttgcgttacttatttgggaacaataaaaataaa 140  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  15104314 caactagacaatttgcgttacttatttgggaacaataaaaataaa 15104358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 3774956 - 3774998
Alignment:
Q  150 agggtttatagttttgcaatttaatctatttgcaacagagcaa 192  Q
    |||||||| || |||||||||| ||||||||||||||||||||    
T  3774956 agggtttaaagatttgcaattttatctatttgcaacagagcaa 3774998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 7611532 - 7611594
Alignment:
Q  249 aagtgatgagtttattgggttttactatc-tatcagctgtcgagttgcacctgctgatcacac 310  Q
    ||||||||||||  | |||||||| |||| || ||||||||||||||||||| ||||||||||    
T  7611532 aagtgatgagttcgtggggttttattatcctaccagctgtcgagttgcacctactgatcacac 7611594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 25643771 - 25643837
Alignment:
Q  249 aagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacacaggtt 315  Q
    ||||||||||||| | |||||||| | ||||| |||||| ||||||||||| || ||||||| ||||    
T  25643771 aagtgatgagtttgtggggttttattttctatgagctgttgagttgcacctacttatcacacgggtt 25643837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 9737514 - 9737420
Alignment:
Q  117 ttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    |||||||||||||| | ||||||| |  ||| ||||||||| | |||||||||||||||| |||| | ||||||||| ||||   ||||||||||||    
T  9737514 ttatttgggaacaaaataaataaa-agagat-aagggtttagatttttgcaatttaatctgtttgtaccagagcaaattttacacgttttgattgca 9737420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 13587291 - 13587339
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaataaaaataaa 140  Q
    |||||||| ||| |||| |||| |||||||||| |||||||||||||||    
T  13587291 gtttcaaccaaacaattcgcgtcacttatttggaaacaataaaaataaa 13587339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 40215282 - 40215230
Alignment:
Q  161 ttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||||||||||| |||| ||||||||||||||| || || ||||||| ||||||    
T  40215282 ttttgcaatttgatctgtttgcaacagagcaaggtatacctgttttaattgca 40215230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 11508 - 11573
Alignment:
Q  244 tatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcaca 309  Q
    |||| ||||||||||||||| |||||| |||| |||||| ||||| |||||||| |||||||||||    
T  11508 tatctaagtgatgagtttatggggtttcactacctatcaactgtcaagttgcacatgctgatcaca 11573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 11308 - 11357
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaac-aataaaaataaa 140  Q
    |||||||| ||| ||||||| |||||||||||||||| ||||||||||||    
T  11308 gtttcaaccaaacaatttgcattacttatttgggaacaaataaaaataaa 11357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 18713 - 18664
Alignment:
Q  149 aagggtttatagttttgcaatttaatctatttgcaacagagcaaagttta 198  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||    
T  18713 aagggtttagagttttgcaatttaatctgtttgcaacagaacaaagttta 18664  T

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Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 223023 - 222957
Alignment:
Q  133 aaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagttta 198  Q
    |||||||||||  ||| ||||||||| |||||||||||||||||| ||||||| ||| |||||||||    
T  223023 aaaataaataaatatataagggtttagagttttgcaatttaatctgtttgcaatagaacaaagttta 222957  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 30900822 - 30900778
Alignment:
Q  149 aagggtttatagttttgcaatttaatctatttgcaacagagcaaa 193  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  30900822 aagggtttagagttttgcaatttaatctatttacaacagagcaaa 30900778  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 15454981 - 15455072
Alignment:
Q  223 tattcgacttttagcgttttttatccaagtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacacaggt 314  Q
    ||||| || |||||| |||| |||| ||||||||||||  | ||||||||||| |||  || |||| | |||||||||||||||||||||||    
T  15454981 tattcaacctttagctttttctatcgaagtgatgagttcgtggggttttactacctactagatgtcaacttgcacctgctgatcacacaggt 15455072  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 8503100 - 8503018
Alignment:
Q  93 tttcaactaaataatttgcgttacttatttgggaacaataaaaataaa--taatgataaagggtttatagttttgcaatttaat 174  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||| |||   || ||| |||| |||| ||||||||||||||||    
T  8503100 tttcaaccaaacaatttgcgttactaatttgggaacaataaaaaaaaaataaaagat-aaggatttagagttttgcaatttaat 8503018  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 9239214 - 9239304
Alignment:
Q  92 gtttcaactaaataatttgcgttacttatttgggaacaataaaaataaataatgataaagggtttatagttttgcaatttaatctatttgcaaca 186  Q
    |||| ||| |||||||| | ||||||||||| |||||||||||||||   || |||||| |||||| |||||  ||||||||||| |||||||||    
T  9239214 gttttaaccaaataattagtgttacttatttaggaacaataaaaata---aaagataaa-ggtttagagtttaccaatttaatctgtttgcaaca 9239304  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 28770418 - 28770355
Alignment:
Q  148 aaagggtttatagttttgcaatttaatctatttgcaacagagcaaagtttatctgttttgattg 211  Q
    |||| ||||| |||||||||||||||| |  |||||||| | ||||||||| ||||||||||||    
T  28770418 aaagagtttagagttttgcaatttaatttgcttgcaacataacaaagtttacctgttttgattg 28770355  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 27418435 - 27418559
Alignment:
Q  93 tttcaactaaataatttgcgttacttatttgggaacaata-aaaataaat--aatgata-aagggtttatagttttgcaatttaatctatttgcaacaga 188  Q
    ||||||| ||| |||| | ||||||||||| ||||||| | |||||||||  || || | ||||||||| | |||| ||||||||||| |||| |||||     
T  27418435 tttcaaccaaacaattcgtgttacttattttggaacaaaataaaataaattaaaagagataagggtttagaatttttcaatttaatctgtttggaacagc 27418534  T
Q  189 gcaaagtttatctgttttgattgca 213  Q
    |||||| ||| || |||||||||||    
T  27418535 gcaaagcttacctattttgattgca 27418559  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 32620051 - 32620079
Alignment:
Q  281 cagctgtcgagttgcacctgctgatcaca 309  Q
    |||||||||||||||||||||||||||||    
T  32620051 cagctgtcgagttgcacctgctgatcaca 32620079  T

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Target: scaffold0672 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 1823 - 1905
Alignment:
Q  114 tacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaaagtt 196  Q
    ||||| || ||||||||||||| ||||||| || | ||| ||||| |||||||||||||||||| |||||||| ||||||||||    
T  1823 tacttgttcgggaacaataaaa-taaataaagagataagtgtttagagttttgcaatttaatctgtttgcaacggagcaaagtt 1905  T

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Target: scaffold0394 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 13718 - 13659
Alignment:
Q  251 gtgatgagtttattgggttttactatctatcagctgtcgagttgcacctgctgatcacac 310  Q
    ||||||||||| | ||||||||||| ||| |||||||| ||||||||||| |||||||||    
T  13718 gtgatgagtttgtggggttttactacctaccagctgtcaagttgcacctgatgatcacac 13659  T

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Target: scaffold0238 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 19185 - 19285
Alignment:
Q  99 ctaaataatttgcgttacttatttgggaacaataaaaataaataatgataaagg-gtttatagttttgcaatttaatctatttgcaacagagcaaagttt 197  Q
    ||||| |||| |||||| ||||||| |||||| | |||||||||| |||| |   ||||| |||||| ||||||||| | ||||||||| ||||||||||    
T  19185 ctaaacaattcgcgttaattatttgagaacaaaataaataaataaggatatacaagtttagagtttttcaatttaatgtgtttgcaacaaagcaaagttt 19284  T
Q  198 a 198  Q
    |    
T  19285 a 19285  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 15419 - 15376
Alignment:
Q  170 ttaatctatttgcaacagagcaaagtttatctgttttgattgca 213  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||    
T  15419 ttaatctgtttgcaacagagcgaagtttacctgttttgattgca 15376  T

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Target: scaffold0128 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 615 - 523
Alignment:
Q  99 ctaaataatttgcgttacttatttgggaacaataaaaataaataatgata-aagggtttatagttttgcaatttaatctatttgcaacagagcaa 192  Q
    ||||||||||  ||||||||||||||||| || || ||||||||| || | |||||||  ||||||| ||||||||| |||||||| || |||||    
T  615 ctaaataattcacgttacttatttgggaaaaaaaataataaataaagagataagggtt--tagtttttcaatttaatttatttgcagcaaagcaa 523  T

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