View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_low_12 (Length: 322)
Name: NF12299_low_12
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 41795261 - 41794973
Alignment:
| Q |
16 |
tctctctccaacaatggctcgttcacctcaacatcaagaacatgagaccgtgaacaaatttcttcttctttttcttcaatattggaaggtttatcatcat |
115 |
Q |
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| T |
41795261 |
tctctctccaacaatggctcattcacctcaacatcaagaacatgagaccgtgaacaaatttcttcttctttttcttcaatattggaaggtttatcatcat |
41795162 |
T |
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| Q |
116 |
catcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatattgtgagt |
215 |
Q |
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| T |
41795161 |
catca---ctagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgttgttcttgtctatattgtgagt |
41795065 |
T |
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| Q |
216 |
gtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacag |
307 |
Q |
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| T |
41795064 |
gtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacag |
41794973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 114 - 307
Target Start/End: Complemental strand, 41760314 - 41760121
Alignment:
| Q |
114 |
atcatcatcactagaagagttggagaaagatttagttaaaccaacgaaaactaggagaccattgcaaaggaggaacatgctgttcttgtctatattgtga |
213 |
Q |
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| T |
41760314 |
atcatcatcactagaagaggcagaaaaagatttagttaaaccaacaaaaacaaggagaccattacaaaggaggaacatgctattcttgtctatgttgtga |
41760215 |
T |
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| Q |
214 |
gtgtagagttgagaaggaaaagtagagaaatataatttaaagtagtgaaggataacaaacaaggaagaaggtgaacaaatgaaggaaaacacag |
307 |
Q |
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| T |
41760214 |
gtgtagagttgaaaagggagagtagagaaatataatttaaagtaatgaaggaaaacaaacaaggaagaaggtgaaaagatgaagcaaaacacag |
41760121 |
T |
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