View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_low_13 (Length: 313)
Name: NF12299_low_13
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 41212086 - 41211784
Alignment:
| Q |
1 |
gccatagtgttctatcataaacccaaagtacaaaatgacacagtccgaaaattaggttactcataaaaggataagagtcttgtttcaaatttgtgcatgc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41212086 |
gccataatgttctatcataaacccaaagtacaaaatgacacggtccgaaaattaggttactcataaaaggataagagtcttgtttcaaatttgtgcatgc |
41211987 |
T |
|
| Q |
101 |
aagggtttgattgtggtgttttcgatattgcgaaaatggtgtgaactctaaacttgcagagttactttggttgattgatttgttaactaaaagttatcaa |
200 |
Q |
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| T |
41211986 |
aagggtttgattgtggtgttttcgatattgcgaaaatggtgtgaactctaaacttgcagagttacttttgttgattgatttgttaactaaaagttatcaa |
41211887 |
T |
|
| Q |
201 |
aatctaactaggttagttaagtgagactgccaagcaaattacaaattataaaaagaagctttgactttcatatcacatcctcttttagtagccaacacag |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41211886 |
aatctaactaggttagttaagtgaatctgccaagcaaattacaaattataaaaagaagctttgactttcatatcacatcctcttttagtagccaacacag |
41211787 |
T |
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| Q |
301 |
gtt |
303 |
Q |
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||| |
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| T |
41211786 |
gtt |
41211784 |
T |
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