View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12299_low_14 (Length: 300)

Name: NF12299_low_14
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12299_low_14
NF12299_low_14
[»] chr8 (4 HSPs)
chr8 (19-210)||(3068773-3068964)
chr8 (19-214)||(3305804-3305999)
chr8 (124-210)||(3069064-3069150)
chr8 (124-210)||(3305618-3305704)
[»] scaffold0428 (2 HSPs)
scaffold0428 (19-214)||(7485-7680)
scaffold0428 (124-208)||(7765-7849)
[»] chr7 (9 HSPs)
chr7 (19-214)||(24825745-24825940)
chr7 (19-210)||(32792968-32793159)
chr7 (19-210)||(11324233-11324424)
chr7 (42-210)||(37873416-37873584)
chr7 (42-211)||(37879058-37879227)
chr7 (124-210)||(24825558-24825644)
chr7 (124-209)||(32792783-32792868)
chr7 (142-214)||(9402555-9402627)
chr7 (143-212)||(11324050-11324119)
[»] chr2 (6 HSPs)
chr2 (19-210)||(12414022-12414213)
chr2 (19-210)||(12426082-12426273)
chr2 (19-210)||(4731868-4732059)
chr2 (124-215)||(4731709-4731800)
chr2 (143-212)||(12413835-12413904)
chr2 (143-212)||(12425895-12425964)
[»] chr4 (14 HSPs)
chr4 (19-210)||(41315898-41316089)
chr4 (19-208)||(15874229-15874418)
chr4 (19-211)||(20878691-20878883)
chr4 (19-210)||(42305904-42306094)
chr4 (19-215)||(38484455-38484652)
chr4 (19-211)||(23254562-23254754)
chr4 (19-211)||(55893212-55893401)
chr4 (125-217)||(42306195-42306287)
chr4 (124-214)||(23254372-23254462)
chr4 (129-210)||(55893466-55893547)
chr4 (128-215)||(15874522-15874609)
chr4 (127-214)||(41316192-41316278)
chr4 (141-209)||(38485175-38485243)
chr4 (165-209)||(20878988-20879032)
[»] scaffold0291 (2 HSPs)
scaffold0291 (19-217)||(11240-11438)
scaffold0291 (19-210)||(10953-11144)
[»] chr3 (13 HSPs)
chr3 (19-209)||(40560644-40560834)
chr3 (19-210)||(31724352-31724543)
chr3 (19-211)||(33794432-33794623)
chr3 (19-211)||(14783733-14783925)
chr3 (19-214)||(5047999-5048194)
chr3 (19-210)||(20124654-20124846)
chr3 (19-201)||(2439955-2440137)
chr3 (124-215)||(2439764-2439855)
chr3 (124-210)||(5048294-5048380)
chr3 (141-211)||(14784027-14784098)
chr3 (143-210)||(31724657-31724724)
chr3 (128-211)||(40560472-40560554)
chr3 (128-209)||(33794727-33794806)
[»] chr1 (10 HSPs)
chr1 (19-217)||(52331592-52331790)
chr1 (19-210)||(34492414-34492605)
chr1 (19-212)||(7709887-7710080)
chr1 (21-209)||(37646844-37647032)
chr1 (73-208)||(13618340-13618475)
chr1 (124-210)||(52331406-52331492)
chr1 (124-209)||(7709700-7709785)
chr1 (93-208)||(13618543-13618658)
chr1 (144-214)||(34492232-34492302)
chr1 (143-210)||(13618255-13618322)
[»] chr6 (15 HSPs)
chr6 (19-210)||(33746711-33746902)
chr6 (19-211)||(16766287-16766479)
chr6 (19-184)||(20582793-20582958)
chr6 (19-211)||(16368785-16368977)
chr6 (42-210)||(11242291-11242459)
chr6 (19-211)||(6851247-6851437)
chr6 (42-214)||(11246259-11246431)
chr6 (130-209)||(16766556-16766635)
chr6 (133-210)||(29846978-29847055)
chr6 (127-207)||(20582638-20582718)
chr6 (144-212)||(33746961-33747029)
chr6 (27-91)||(29846909-29846973)
chr6 (143-210)||(16368640-16368707)
chr6 (143-210)||(29846788-29846855)
chr6 (143-210)||(6851549-6851615)
[»] chr5 (6 HSPs)
chr5 (19-211)||(31155527-31155719)
chr5 (19-209)||(39761499-39761689)
chr5 (19-209)||(31155893-31156083)
chr5 (124-212)||(39760421-39760509)
chr5 (124-211)||(31156183-31156270)
chr5 (149-210)||(31155369-31155430)
[»] scaffold0184 (2 HSPs)
scaffold0184 (19-209)||(7143-7328)
scaffold0184 (124-219)||(7008-7103)
[»] scaffold0032 (2 HSPs)
scaffold0032 (19-170)||(32959-33112)
scaffold0032 (124-216)||(33206-33298)
[»] scaffold1408 (1 HSPs)
scaffold1408 (94-214)||(1739-1859)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 3068964 - 3068773
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  3068964 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatt 3068865  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  3068864 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 3068773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 3305804 - 3305999
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||      
T  3305804 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagatt 3305903  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
         |||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3305904 tttttgcggggactgatttctaaatttttattttacaaggaagaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 3305999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 3069064 - 3069150
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  3069064 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 3069150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 3305704 - 3305618
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  3305704 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaagcct 3305618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 7680 - 7485
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||      
T  7680 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatt 7581  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
         ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  7580 tttttgcggggattgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcataaaa 7485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 7765 - 7849
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7765 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaagc 7849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 24825745 - 24825940
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||      
T  24825745 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgttatgacttaaatgggcccaggggtatttttaaaagacagatt 24825844  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
         ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  24825845 tttttgcggggactgatttctgaatttttatttttcaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccaaaaa 24825940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 32792968 - 32793159
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  32792968 caaaaactacaaagtgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatt 32793067  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  32793068 tttttgcagggactgatttctgaatttttattttacaaggaccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaagcct 32793159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 11324233 - 11324424
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  11324233 caaaaactacaaaatgcgttcaatcagcgtgcgccatgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatt 11324332  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         |||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  11324333 tttttgcggagattgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaagcct 11324424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 37873584 - 37873416
Alignment:
Q  42 tcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagannnnnnngcggggactgatttctga 141  Q
    |||||| |||||||||   |||||| ||||| |||||| | ||||||||| ||||||||||||||||||||||||       || |||||||||||||||    
T  37873584 tcagcgcgcgccacgtgtacattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaattttttgcagggactgatttctga 37873485  T
Q  142 atttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37873484 atttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 37873416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 37879058 - 37879227
Alignment:
Q  42 tcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagannnnnnngcggggactgatttctga 141  Q
    |||||| |||||||||   |||||| ||||| |||||| | ||||||||| ||||||||||||||||||||||||       || |||| ||||||||||    
T  37879058 tcagcgcgcgccacgtgtacattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaattttttgcagggattgatttctga 37879157  T
Q  142 atttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  37879158 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtacaatatttaagccta 37879227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 24825644 - 24825558
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  24825644 gcggagactgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaagcct 24825558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 32792868 - 32792783
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  32792868 gcggggattgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcc 32792783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 9402627 - 9402555
Alignment:
Q  142 atttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaaacctaaaa 9402555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 11324119 - 11324050
Alignment:
Q  143 tttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaa 212  Q
    ||||| ||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||| |||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgcaatatttaaacctaa 11324050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 12414022 - 12414213
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  12414022 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatt 12414121  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         ||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  12414122 tttttgcggggactgatttctgaatttttattttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 12414213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 12426082 - 12426273
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  12426082 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatt 12426181  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         ||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  12426182 tttttgcggggactgatttctgaatttttattttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 12426273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 4731868 - 4732059
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |      
T  4731868 caaaaactacaaaatgggttcaatcagcgtgcgccacgtagacattttggtgacttgtcatgacttaaatgggcccagggatatttttaaaagacatatt 4731967  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  4731968 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggatgagtgcaatatttaagcct 4732059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 4731800 - 4731709
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaat 215  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  4731800 gcgggaactgatttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaagccaaaaat 4731709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 12413904 - 12413835
Alignment:
Q  143 tttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaa 212  Q
    ||||| ||||| | |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  12413904 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcctaa 12413835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 12425964 - 12425895
Alignment:
Q  143 tttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaa 212  Q
    ||||| ||||| | |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  12425964 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcctaa 12425895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 41316089 - 41315898
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||      
T  41316089 caaaaactacaaaattggttcaatcagcgtgcaccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatt 41315990  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  41315989 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagcct 41315898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 15874418 - 15874229
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||| |      
T  15874418 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgccttaaatgcgcccaggggtatttttaaaagacaaatt 15874319  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagc 208  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15874318 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 15874229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 20878883 - 20878691
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||      
T  20878883 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatt 20878784  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||    
T  20878783 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaagccta 20878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 42306094 - 42305904
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||      
T  42306094 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggac-aggggtatttttaaaagacagatt 42305996  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  42305995 tttttgcggggactgatttctgaatttttattttacgaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 42305904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 38484652 - 38484455
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||||||||||||||      
T  38484652 caaaaactacaaaatatgttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatggacccagggatatttttaaaagacagatt 38484553  T
Q  119 nnnnn-gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaat 215  Q
          ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38484552 ttttttgcaaagactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagagacgagtgcaatatttaagcctaaaat 38484455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 23254562 - 23254754
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||| ||||| |||||||| | | ||||||||||||| ||||| |||||||||||||||||||||| | ||||| ||||||||||||||||||      
T  23254562 caaaaactaaaaaatgggttcaattaacatgcgccacgtaggtattttggtgacttgtcatgacttaaatgagcccaggagtatttttaaaagacagatt 23254661  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  23254662 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 23254754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 55893401 - 55893212
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||||||||||||      
T  55893401 caaaaactacaaaatgggttcaattagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgagcccagggctatttttaaaagacagatt 55893302  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         |||||||   |||||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  55893301 tttttgcgggga---atttctgaatttttattttacaataaccaaaacttaaacgggccatatttgcagagacgggtgcaatatttaagccta 55893212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 42306195 - 42306287
Alignment:
Q  125 cggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaataa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  42306195 cggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaagcctaaaataa 42306287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 23254462 - 23254372
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  23254462 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccaaaaa 23254372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 55893466 - 55893547
Alignment:
Q  129 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55893466 gactgatttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaagcct 55893547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 15874522 - 15874609
Alignment:
Q  128 ggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaat 215  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||    
T  15874522 ggactgatttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagccttaaat 15874609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 41316192 - 41316278
Alignment:
Q  127 gggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  41316192 gggacggatttctgaatttt-attttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaagcctaaaa 41316278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 38485175 - 38485243
Alignment:
Q  141 aatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
    ||||||| ||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 38485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 20878988 - 20879032
Alignment:
Q  165 acttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  20878988 acttaaacgggccatatttgcagggacgagtgtaatatttaagcc 20879032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 11240 - 11438
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||| || |||||||| ||||||||||||||||||||||||      
T  11240 caaaatctacaaaatgggttcaatcagcgtgcgccacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagatt 11339  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaataa 217  Q
         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11340 tttttgcgaggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaatataa 11438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 11144 - 10953
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||| || |||||||| ||||||||||||||||||||||||      
T  11144 caaaatctacaaaatgggttcaatcagcgtgcgccacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagatt 11045  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  11044 tttttgcgaggactgatttctgaatttttattttacaaggaccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaagcct 10953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 40560644 - 40560834
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||      
T  40560644 caaaaactacaaaatgggttcaatcagcgtgtgccacgtaggtattttagtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagatt 40560743  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  40560744 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 40560834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 31724543 - 31724352
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |      
T  31724543 caaaaactacaaagtgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggtccaagggtatttttaaaagacaaatt 31724444  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  31724443 tttttgcggggactgatttctgaatttttattttacaaggaccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagcct 31724352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 33794623 - 33794432
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||      
T  33794623 caaaaactacaaaatgagttcaatcagcgtgtgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatt 33794524  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  33794523 tttt-gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 33794432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 14783925 - 14783733
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |||| |      
T  14783925 caaaaactacaaaatgggttcaatcagcgtacgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggcatttttaaacgacaaatt 14783826  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  14783825 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagccta 14783733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 5048194 - 5047999
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||| |||||||||||| ||||||||||  |||||||||||||||||||| |||      
T  5048194 caaaaactacaaaatgagttcaatcagcgtgtgccacgtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagatagatt 5048095  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
         |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  5048094 ttttcgcggggactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaagcctaaaa 5047999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 20124846 - 20124654
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtcc-aggggtatttttaaaagacagan 117  Q
    |||||| ||||||||  ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| || |||||||||||||||||||| |     
T  20124846 caaaaattacaaaatgagttcaatcagcgtgcgctacgtaggcattttggtgacttgtcattacttaaatgggccccaggggtatttttaaaagacatat 20124747  T
Q  118 nnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
          ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20124746 ttttttgcggggactgatttctgaatttttattttacaaagaccaaaacttaaacggaccatatttacagggacgagtgcaatatttaagcct 20124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 2439955 - 2440137
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||      
T  2439955 caaaaactacaaaatgagttcaatcagcgtgcgccatgtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagacagatt 2440054  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaata 201  Q
         |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  2440055 tttttgcggggactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 2439855 - 2439764
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaat 215  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2439855 gcggggattgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaat 2439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 5048294 - 5048380
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5048294 gcggggactgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 5048380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 14784027 - 14784098
Alignment:
Q  141 aatttttatttt-acaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
    |||||||||||| ||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccta 14784098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 31724657 - 31724724
Alignment:
Q  143 tttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    |||||| |||||  |||| |||||||||||||||||||||| || |||||||||||||||||||||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcct 31724724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 40560554 - 40560472
Alignment:
Q  128 ggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
    |||||||||||||||||||| ||||||| |||| |||| | ||||| | ||||||| |||||||| ||||||||||||||||||    
T  40560554 ggactgatttctgaattttt-ttttacagggactaaaattaaaacgaggcatatttgcagggacgggtgcaatatttaagccta 40560472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 33794727 - 33794806
Alignment:
Q  128 ggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
    |||||||||||||| |||||  |||||| |||| |||| | ||||| | ||||||| |||||||||||||||||||||||||    
T  33794727 ggactgatttctgatttttt--tttacagggactaaaattaaaacgaggcatatttgcagggacgagtgcaatatttaagcc 33794806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 52331592 - 52331790
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| | |      
T  52331592 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttgatgacttgtcatgacttaaatgggcccaggggtatttttaaaagataaatt 52331691  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaataa 217  Q
         |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52331692 tttttgcggggactgatttctaaatttttattttacaaggatcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaataa 52331790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 34492414 - 34492605
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||      
T  34492414 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatt 34492513  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         ||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||    
T  34492514 tttttgcgggaactgatgtctgaatttttattttacaaggaccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaagcct 34492605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 7709887 - 7710080
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||      
T  7709887 caaaaactacaaaatgggttcaatcagtgtgtgccacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagatt 7709986  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaa 212  Q
         ||  ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  7709987 tttttgcaaggactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctaa 7710080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 37646844 - 37647032
Alignment:
Q  21 aaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagannnn 120  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||        
T  37646844 aaaactacaaaatgagttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttt 37646943  T
Q  121 nnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
       ||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||  |||| |||||||||||||||    
T  37646944 tttgcacggactgatttttgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaagcc 37647032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 13618340 - 13618475
Alignment:
Q  73 ttgtcatgacttaaatgggtccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaac 172  Q
    ||||||||||||||||||| ||||||||||||||||||||||||       || |||| |||||||||| ||||||||||||||||||||||||||||||    
T  13618340 ttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgctgggattgatttctgattttttattttacaaggaccaaaacttaaac 13618439  T
Q  173 gggccatatttacagggacgagtgcaatatttaagc 208  Q
    ||||||||||| ||||||||| ||||||||||||||    
T  13618440 gggccatatttgcagggacgaatgcaatatttaagc 13618475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 52331492 - 52331406
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52331492 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 52331406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 7709785 - 7709700
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  7709785 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaagcc 7709700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 13618543 - 13618658
Alignment:
Q  93 ccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacg 192  Q
    ||||||||||||||||||||||||       || |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  13618543 ccaggggtatttttaaaagacagatttttttgctgggattgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagggacg 13618642  T
Q  193 agtgcaatatttaagc 208  Q
    | ||||||||||||||    
T  13618643 aatgcaatatttaagc 13618658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 34492302 - 34492232
Alignment:
Q  144 ttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
    |||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccaaaaa 34492232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 13618322 - 13618255
Alignment:
Q  143 tttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    ||||| ||||||| |||| |||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaagcct 13618255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 33746902 - 33746711
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||      
T  33746902 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatt 33746803  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
         || |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33746802 tttttgcagggattgatttctgaatttttattttacatggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 33746711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 16766479 - 16766287
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||      
T  16766479 caaaaactgcaaaataggttcaatcagcgtgcgccacgtaggcattttggtgacttgccatgacttaaatgggcccaagggtatttttaaaagacagatt 16766380  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         ||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  16766379 tttttgcggggactgatttctgaatttttattttacaaagaccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaagccta 16766287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 20582793 - 20582958
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||| |||||||||||||||||      
T  20582793 caaaaactacaaaatgggttcaatcagcgtgcgccacgtaggcattttgatgacttgtcatgacttaaatgggcccagggatatttttaaaagacagatt 20582892  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatattta 184  Q
         |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20582893 tttttgcggggtctgatttctaaatttttattttacaaggaccaaaacttaaacgggccatattta 20582958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 16368785 - 16368977
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |      
T  16368785 caaaaactaaaaaatgggttcaattagcgtgcgccacgtaggcattttggtgacttgtcatgatttaaatgggcccaggggtatttttaaaagacaaatt 16368884  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         |  |||||||||||||||||||| |||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  16368885 tttttgtagggactgatttctgaattttcattttacacggaccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaagccta 16368977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 11242459 - 11242291
Alignment:
Q  42 tcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagannnnnnngcggggactgatttctga 141  Q
    ||||||| ||||||||||||||||| || || |||||||||||||||||||||| | ||||||||||||||||||       ||||||||||||||||||    
T  11242459 tcagcgtacgccacgtaggcattttggtcacctgtcatgacttaaatgggtccatgagtatttttaaaagacagatttttttgcggggactgatttctga 11242360  T
Q  142 atttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    |||||||||||||||||| ||||||||||| | ||||||||||  ||||||||||||||||||||||||    
T  11242359 atttttattttacaaggatcaaaacttaaatgagccatatttatggggacgagtgcaatatttaagcct 11242291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 6851437 - 6851247
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    |||| |||||||||| |||||||  || || | ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||       
T  6851437 caaatactacaaaatgggttcaa--agtgtacaccacgtaagcattttggtgacttgtcatgacttaaatggatccaggggtatttttaaaagacagttt 6851340  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         | ||| ||||||||||||||||||||||||||| |||||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  6851339 tttttgtgggaactgatttctgaatttttattttacaaagaccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaagccta 6851247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 11246259 - 11246431
Alignment:
Q  42 tcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagannnnnnngcggggactgatttctga 141  Q
    |||||||||| |||||||||||||| || || | ||||||||||||| | || |||||||||| ||||||||| |       | |||||||||||| |||    
T  11246259 tcagcgtgcgtcacgtaggcattttggtaacctttcatgacttaaatagatctaggggtatttataaaagacaaatttttttgtggggactgatttgtga 11246358  T
Q  142 atttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaa 214  Q
    |||||||||||||||||||  |||||||||| |  ||||||| |||||| |||||||||||||||||||||||    
T  11246359 atttttattttacaaggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaagcctaaaa 11246431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 16766556 - 16766635
Alignment:
Q  130 actgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  16766556 actgatttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaagcc 16766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 29846978 - 29847055
Alignment:
Q  133 gatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29846978 gatttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 29847055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 20582718 - 20582638
Alignment:
Q  127 gggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||||||||||||    
T  20582718 gggactgatttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaag 20582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 33746961 - 33747029
Alignment:
Q  144 ttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaa 212  Q
    |||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaagcctaa 33747029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 29846909 - 29846973
Alignment:
Q  27 acaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatggg 91  Q
    ||||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  29846909 acaaaatgggttcaatcagcttgcgccacgtaggcaatttggtgacttgtcatgacttaaatggg 29846973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 16368707 - 16368640
Alignment:
Q  143 tttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    ||||| ||||||| |||| |||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagcct 16368640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 29846855 - 29846788
Alignment:
Q  143 tttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    ||||| ||||||| |||| |||||||||| |  |||||||| ||||||||||||||||||||||||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaagcct 29846788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 6851549 - 6851615
Alignment:
Q  143 tttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    ||||| ||||||| | || |||||||||||| ||||||||| ||| |||| |||||||||||||||||    
T  6851549 ttttttttttacaggaacgaaaacttaaacgagccatatttgcagagacg-gtgcaatatttaagcct 6851615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 31155527 - 31155719
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| |      
T  31155527 caaaaactacaaaatggattcaatcagcgtgcgtcacgtaggcattttggtgacttgtcatgacttaaatgggcccaagggtatttttaaaagacatatt 31155626  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  31155627 tttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccta 31155719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 39761499 - 39761689
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||      
T  39761499 caaaaactacaaaatgggttcaatcagcgtgtgccacgtaagcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatt 39761598  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
         || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  39761599 tttttgcagggactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaagcc 39761689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 31156083 - 31155893
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagann 118  Q
    ||||| |||||||||  ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |      
T  31156083 caaaatctacaaaatgagttcaatcagcgtgcgccacgtaagcattttggtgacttgtcataacttaaatgggcccaggggtatttttaaaagacatatt 31155984  T
Q  119 nnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
         ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||  |||||||||||||    
T  31155983 tttttgcgaggactgatttctgaatttttattttacaaggaccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaagcc 31155893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 39760509 - 39760421
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaa 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  39760509 gcggggactaatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctaa 39760421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 31156183 - 31156270
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||| |||||||||||||||||    
T  31156183 gcggggactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaagccta 31156270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 31155430 - 31155369
Alignment:
Q  149 ttttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 210  Q
    |||||||||||| |||| ||||||||||||||||| || |||||||| ||||||||||||||    
T  31155430 ttttacaaggacaaaaaattaaacgggccatatttgcatggacgagtacaatatttaagcct 31155369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 7143 - 7328
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaa-gacagan 117  Q
    |||||||||| |||| ||||||||||||||||||||||||      || |||||||||||||||||||||||| |||||||||||||||||| ||||||     
T  7143 caaaaactaccaaatgggttcaatcagcgtgcgccacgta------ttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaaagacagat 7236  T
Q  118 nnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcc 209  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||    
T  7237 ttttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgaatccaatatttaagcc 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 7103 - 7008
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaataatt 219  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| || |||||    
T  7103 gcggggattgatttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagccttaattaatt 7008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 33112 - 32959
Alignment:
Q  19 caaaaactacaaaataggttcaatcagcgtgcgccacgtaggcattttagtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacaga-- 116  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||      
T  33112 caaaaactacaaaatgggttcaatcagcgtgcgccacataggcattttggtgacttgtcatgacttatatgggtccaggggtatttttaaaagacagatt 33013  T
Q  117 nnnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaa 170  Q
           |||||||||||||||||||||||||||||||||||||||||||||||    
T  33012 tttttttgcggggactgatttctgaatttttattttacaaggaccaaaacttaa 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 33206 - 33298
Alignment:
Q  124 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaaaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||| |||||    
T  33206 gcggggactgatttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaaaccttaaata 33298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 1859 - 1739
Alignment:
Q  94 caggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacga 193  Q
    |||||||||||||||||||||||       ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  1859 caggggtatttttaaaagacagatttttttgcggggattgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacga 1760  T
Q  194 gtgcaatatttaagcctaaaa 214  Q
    ||||||||||||||| |||||    
T  1759 gtgcaatatttaagcataaaa 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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