View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_low_20 (Length: 222)
Name: NF12299_low_20
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 21895378 - 21895567
Alignment:
| Q |
16 |
agatgaacgttagaacaaaaaagcagtagcataaacgactccctgttagaggcaaacaattggggtatgcatctaaggtatatattttattatgaagtta |
115 |
Q |
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| T |
21895378 |
agatgaacgttagaacaaaaaagcagtagcataaacgactccctgttagaggcaaacaattggggtatgcatctaaggtatatattttattatgaagtta |
21895477 |
T |
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| Q |
116 |
cgtttcttaactataatttgctttacaatgacgaaacttgaaaatatggcaacaggccattacatgctgcaattgattctacaaataagg |
205 |
Q |
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| T |
21895478 |
tgtttcttaactataatttgctttacaatgacggaacttgaaaatatggcaacatgccattacatgctgcaattgattctacaaataagg |
21895567 |
T |
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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 37249154 - 37249059
Alignment:
| Q |
91 |
aggtatatattttattatgaagttacgtttcttaactataatttgctttacaatgacgaaacttgaaaatatggcaacaggccattacatgctgca |
186 |
Q |
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||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| | ||||||||||||||||||| | |||| ||| |||||| |
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| T |
37249154 |
aggtatatacattattatgaagttaagtttcgaaactataatttgctttacagtgagggaacttgaaaatatggcaactgaccataacacgctgca |
37249059 |
T |
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