View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_low_6 (Length: 393)
Name: NF12299_low_6
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 41480965 - 41481187
Alignment:
| Q |
24 |
cacatagcacagagcttatcagaattgaatagattgctcatcagaattagcttctctcattgtgatatccttttggacagttgaagactgctttctgttc |
123 |
Q |
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| T |
41480965 |
cacatagcacagagcttatcagaattgaatagattgctcatcagaattagcttctctcattgtgatatccttttggacagttgaagactgctttctgttc |
41481064 |
T |
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| Q |
124 |
acggtcaggagactattactttatttcaacgataaccaatcaaggaactcttgtaactgattggattatgttcaactacataacactaaaatctcccttt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41481065 |
acggtcaggagactattactttatttcaacgataaccaatcaaggaactcttgtaactgattggattatgttcaactacataacactaaaatctcccttt |
41481164 |
T |
|
| Q |
224 |
ttctctaaaatcagtatcagaat |
246 |
Q |
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||||||||||||||||| ||||| |
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| T |
41481165 |
ttctctaaaatcagtattagaat |
41481187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 242 - 377
Target Start/End: Original strand, 41481816 - 41481951
Alignment:
| Q |
242 |
agaatactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttcttt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41481816 |
agaatactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcttgacattggtcacatgttttcgtactctagaatggtttcttt |
41481915 |
T |
|
| Q |
342 |
attggcaaagttgtgaagccacacctcgtagtcaca |
377 |
Q |
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| T |
41481916 |
attggcaaagttgtgaagccacacctcgtaatcaca |
41481951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 386
Target Start/End: Original strand, 41485100 - 41485227
Alignment:
| Q |
260 |
tttctagaacaaactt-acagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaa |
358 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||| |||| | | ||||| |
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| T |
41485100 |
tttctagaacaaactttacagcagatgtcatctacttttcttgtcattggtgacatgttttcgcactctagaatggtttctttatgggcagaatagtgaa |
41485199 |
T |
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| Q |
359 |
gccacacctcgtagtcacaggttctgct |
386 |
Q |
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| T |
41485200 |
gccacacctcatattcacatgttttgct |
41485227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 45386625 - 45386499
Alignment:
| Q |
27 |
atagcacagagcttatcagaattgaatagattgctcatcagaattagcttctctcattgtgatatccttttggacagttgaagactgctttctgttcacg |
126 |
Q |
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| T |
45386625 |
atagcacagaacttatcaga--tgtatatattgcttatcagaattagtttatctgattctgatatccttttagacagttacagactgctttctgctcatg |
45386528 |
T |
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| Q |
127 |
gtcaggagactattactttatttcaacga |
155 |
Q |
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| T |
45386527 |
gtcaggagactagcactttatatcaacga |
45386499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 45386193 - 45386085
Alignment:
| Q |
269 |
caaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaagccacacctc |
368 |
Q |
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|||||||| | || || ||||||||||||| || ||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||| |
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| T |
45386193 |
caaacttatatcaaatttcatctacttttcttgtcattggtggcatgttttcgcactctagaatggtttctttataggcagagttgtgaagccacgcctc |
45386094 |
T |
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| Q |
369 |
gtagtcaca |
377 |
Q |
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|| ||||| |
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| T |
45386093 |
atattcaca |
45386085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 5736694 - 5736588
Alignment:
| Q |
140 |
tactttatttcaacgataaccaatcaaggaactcttgtaactgattggattatgttcaactac------ataacactaaaatctccctttttctctaaaa |
233 |
Q |
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|||||||||| || |||| ||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||||||| || ||| | |
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| T |
5736694 |
tactttatttaaatgatatccaatcaaggaactcccatatatgattagattatgttcaactacatcggtataacactaaaatctccctttctccctagat |
5736595 |
T |
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| Q |
234 |
tcagtat |
240 |
Q |
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||||||| |
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| T |
5736594 |
tcagtat |
5736588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 5773806 - 5773700
Alignment:
| Q |
140 |
tactttatttcaacgataaccaatcaaggaactcttgtaactgattggattatgttcaactac------ataacactaaaatctccctttttctctaaaa |
233 |
Q |
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|||||||||| || |||| ||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||||||| || ||| | |
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| T |
5773806 |
tactttatttaaatgatatccaatcaaggaactcccatatatgattagattatgttcaactacatcggtataacactaaaatctccctttctccctagat |
5773707 |
T |
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| Q |
234 |
tcagtat |
240 |
Q |
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||||||| |
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| T |
5773706 |
tcagtat |
5773700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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