View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12299_low_9 (Length: 332)
Name: NF12299_low_9
Description: NF12299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12299_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 38427830 - 38427527
Alignment:
| Q |
19 |
acattggggtagtaactagtaaccaaacactaataataagaacacgtaaacaatacattttcctttggaccaattcatttattcatttgtaagatcgaat |
118 |
Q |
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| T |
38427830 |
acattggggtagtaactagtaaccaaacactaataataagaacacgtaaacaatacattttcctttggaccaattcatttattcatttgtaagatcgaat |
38427731 |
T |
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| Q |
119 |
aattatatcacacgtttattaccacatgtggacttgcatttcttaaaataacaaccttccttgagaccgattagttattcacataagttacaatcacaca |
218 |
Q |
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| T |
38427730 |
aattatatcacacgtttattaccacatgtggacttgcatttcttaaaataacaaccttccttgagaccgattagttattcacataagttacaatcacaca |
38427631 |
T |
|
| Q |
219 |
acattttatatttcaaaataaattaatttccacaaaagagatcactttgacgacataatgtttcaatcaactcatctcaaactatatacataaactgtcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38427630 |
acattttatatttcaaaataaattaatttccacaaaagagatcactttgacgacataatgtttcaatcaactcatctcaaactatatacataaactgtcc |
38427531 |
T |
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| Q |
319 |
tatg |
322 |
Q |
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|||| |
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| T |
38427530 |
tatg |
38427527 |
T |
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