View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12300_high_2 (Length: 508)
Name: NF12300_high_2
Description: NF12300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12300_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Complemental strand, 36571253 - 36570773
Alignment:
| Q |
11 |
cctgtggaagcaaactcaatggtatggctggttttgctgagtgcttgcagggtgcattctagtttggatgttgcagaaagagctgcgaaacggatatttg |
110 |
Q |
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| T |
36571253 |
cctgtggaagcaaactcaatggtatggctggttttgctgagtgcttgcagggtgcattctagtttggatgttgcagaaagagctgcgaaacggatatttg |
36571154 |
T |
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| Q |
111 |
aaatggagcctgattgtagtgctgcctatgtgctgctgtcgaacttgtatgcatcttctagaagatggttggaagttgcaaggattaggatgaaaatgaa |
210 |
Q |
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| T |
36571153 |
aaatggagcctgattgtagtgctgcctatgtgctgctgtcgaacttgtatgcatcttctagaagatggttggaagttgcaaggattaggatgaaaatgaa |
36571054 |
T |
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| Q |
211 |
acataatggaattgtaaaacaacctgggtcaagttggataaccttaaaaggaatgaggcatgaatttctgtctgcagataggtcccatcctctaaccgag |
310 |
Q |
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| T |
36571053 |
acataatggaattgtaaaacaacctgggtcaagttggataaccttaaaaggaatgaggcatgaatttctgtctgcagataggtcccatcctctaaccgag |
36570954 |
T |
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| Q |
311 |
gaaatctatgaaaagttagtgtggttaggagtaaagttaagagaactgggttatattcctgatcaacaatttgccttgcatgatgttgaaattgagcaaa |
410 |
Q |
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| T |
36570953 |
gaaatctatgaaaagttagtgtggttaggagtaaagttaagagaactgggttatattcctgatcaacaatttgccttgcatgatgttgaaattgagcaaa |
36570854 |
T |
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| Q |
411 |
atgaagaaatgttatcataccatagtgaaaggcttgcaattgcatttggattgcttagcactgtggaaggaagtacaataa |
491 |
Q |
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| T |
36570853 |
atgaagaaatgttatcataccatagtgaaaggcttgcaattgcatttggattgcttagcactgtggaaggaagtacaataa |
36570773 |
T |
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