View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12300_high_4 (Length: 392)
Name: NF12300_high_4
Description: NF12300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12300_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 375
Target Start/End: Original strand, 46630337 - 46630699
Alignment:
| Q |
13 |
ctgtgattgtttatgctgttgttgttcttcaacccatgtgtattgtgatgttctaaatggagaatgtgaacgtgtaactctacgaccagaatttgatgaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630337 |
ctgtgattgtttatgctgttgttgttcttcaacccatgtgtattgtgatgttctatatggagaatgtgaacgtgtaactctacgaccagaatttgatgaa |
46630436 |
T |
|
| Q |
113 |
gaaaattcagaagctggtgttctatctctacctcttctttctccattaccaagagatgaatctttcttatttttaggtgaaaaagcttccattatagctt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630437 |
gaaaattcagaagctggtgttctatctctacctcttctttctccattaccaagagatgaatctttcttatttttaggtgaaaaagcttccattatagctt |
46630536 |
T |
|
| Q |
213 |
ttttacctttagctattggagattttttgactctatttggagatagaagaggagatttagcagattctaaaggcttgattacaccaccatggaaaagttc |
312 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630537 |
ttttaccttttgctattggagattttttgactctatttggagatagaagaggagatttagcagattctaaaggcttgattacaccaccatggaaaagttc |
46630636 |
T |
|
| Q |
313 |
ttcagctgaacgaggtgatgaatctgattctctatgaacagaaaacgcaaatccagcatcttc |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630637 |
ttcagctgaacgaggtgatgaatctgattctctatgaacagaaaacgcaaatccagcatcttc |
46630699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University