View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12300_low_5 (Length: 376)
Name: NF12300_low_5
Description: NF12300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12300_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 35176558 - 35176205
Alignment:
| Q |
9 |
aatgagaaacgcccaatgacaaacttaggatcaaagccaaaagctataaaaactatcacaaatagttttaaaagccttttctaatatcatacttcaaaat |
108 |
Q |
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| T |
35176558 |
aatgagaaacgcccaatgacaaacttaggatcaaagccaaaagctataaaaactatcacaaatagttttaaaacccttttctaatatcatacttcaaaat |
35176459 |
T |
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| Q |
109 |
tatattggctccaaagtatccaacatgatgcaataaaaacaaaagcagacatccgtaccagccctttataaaacctatttgtttctaagaaatgattctg |
208 |
Q |
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| T |
35176458 |
tatattggctccaaagtatccaacatgatgcaataaaaacaaaagcagacatccgtaccagccctttctaaaacctatttgtttctaagaaatgattctg |
35176359 |
T |
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| Q |
209 |
aaggaaataattgataactatcagcaagcattactgcatcagtt-gttttagtatcttttggttagaatttacc-tttaagataaataagtgggatgttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| ||||||||||||||||||||||||| |
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| T |
35176358 |
aaggaaataattgataactatcagcaagcattactgcatcagttatttttagtatcttttagctagaattcaccttttaagataaataagtgggatgttt |
35176259 |
T |
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| Q |
307 |
ggagttcaaacttcaatcgttgtatattataatgtattgtcactatcaactaag |
360 |
Q |
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| T |
35176258 |
ggagttcgaacttcaatcattgtatattataatgtattgtcactatcaactaag |
35176205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 35181235 - 35181050
Alignment:
| Q |
69 |
aatagttttaaaagccttttctaatatcatacttcaaaattatattggctccaaagtatcc-aacatgatgcaataaaaacaaaagcagacatccgtacc |
167 |
Q |
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|||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||| |
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| T |
35181235 |
aatagtttcaaaaccctttttaaatatcaaacttcaaaattatattggctccaaagtatcctaacataatgcaataaaaacacaagcagacatcc--acc |
35181138 |
T |
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| Q |
168 |
agccctttataaaacctatttgtttctaagaaatgattctgaagga---aataattgataactatcagcaagcattactgcatcagtt |
252 |
Q |
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| T |
35181137 |
ggcccttttaaaaacctatttgattctaagaaatgattttgaaggaaataataatagataactatcagcaggcattactacttcagtt |
35181050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 35181298 - 35181267
Alignment:
| Q |
29 |
aaacttaggatcaaagccaaaagctataaaaa |
60 |
Q |
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| T |
35181298 |
aaacttaggatcaaagccaaaagctataaaaa |
35181267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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