View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12300_low_6 (Length: 367)
Name: NF12300_low_6
Description: NF12300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12300_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 32 - 349
Target Start/End: Complemental strand, 21115934 - 21115617
Alignment:
| Q |
32 |
aaacaagaatctaagagtttgtttatgtctgcttgaatcaacctcctcattgattgtaacgataatctttctcccgcacctagtccaaatgcatacctca |
131 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||| |||||||||||||||| |||||| |
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| T |
21115934 |
aaacaagaatcgaagagtttgtttatgtctgcttgaatcaagctcctcattgactgtaatgataatttttctcccatacctagtccaaatgcaaacctca |
21115835 |
T |
|
| Q |
132 |
tcaaatcttctgttggtatgtgatagtcttctggaaaaagagtacacatcattaagagcaattgtgcgtgctgcctttgcaaataatcatagcttaattt |
231 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||| || |||||||||||||||||||||||||||||| |
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| T |
21115834 |
tcaaatcttctgttgggatgtgatagtcttctggaaaaagagtacaaatcattaagagtagctgtgtgtactgcctttgcaaataatcatagcttaattt |
21115735 |
T |
|
| Q |
232 |
aaggcaacttaaagtagtccttactcctccttcatcattagatgcttttgaatccctcaacttatcaaacgcctgctgccacaactcaatttcatgcctt |
331 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21115734 |
aaggcaacttaaagtagtcctcactcctccttcatcattggatgcctttgaatccctcaacttatctaacgcctgctgccacaactcaatttcatgcctt |
21115635 |
T |
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| Q |
332 |
ccttttaaggacgaccct |
349 |
Q |
| |
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|||||||||||||||||| |
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| T |
21115634 |
ccttttaaggacgaccct |
21115617 |
T |
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