View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12300_low_8 (Length: 247)

Name: NF12300_low_8
Description: NF12300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12300_low_8
NF12300_low_8
[»] chr8 (5 HSPs)
chr8 (8-140)||(27635070-27635202)
chr8 (174-233)||(27635201-27635260)
chr8 (22-59)||(6760929-6760966)
chr8 (22-55)||(39460991-39461024)
chr8 (22-54)||(12625995-12626027)
[»] chr7 (1 HSPs)
chr7 (22-52)||(2541019-2541049)
[»] chr5 (5 HSPs)
chr5 (22-52)||(16880647-16880677)
chr5 (13-54)||(32354223-32354264)
chr5 (22-54)||(16957419-16957451)
chr5 (22-54)||(38879688-38879720)
chr5 (22-54)||(41014423-41014455)
[»] chr3 (4 HSPs)
chr3 (22-52)||(14987086-14987116)
chr3 (22-55)||(10484613-10484646)
chr3 (22-55)||(13628787-13628820)
chr3 (22-54)||(54032569-54032601)
[»] chr1 (4 HSPs)
chr1 (22-56)||(10668355-10668389)
chr1 (22-56)||(20004086-20004120)
chr1 (22-54)||(9939592-9939624)
chr1 (22-54)||(14617166-14617198)
[»] chr2 (4 HSPs)
chr2 (22-59)||(10546268-10546305)
chr2 (22-55)||(22371217-22371250)
chr2 (22-54)||(9671284-9671316)
chr2 (22-58)||(36871596-36871632)
[»] chr6 (1 HSPs)
chr6 (13-53)||(6808491-6808531)
[»] chr4 (1 HSPs)
chr4 (22-58)||(20639652-20639688)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 27635070 - 27635202
Alignment:
Q  8 cagaacctgtgaaagcgggagctttagtgcaccgggtttcccttttattaattcttatgtaacttcatcttatgtcattacttttactcattggagacta 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27635070 cagaccctgtgaaagcgggagctttagtgcaccgggtttcccttttattaattcttatgtaacttcatcttatgtcattacttttagtcattggagacta 27635169  T
Q  108 ggtgacactgcaagggaagttcccattcttagt 140  Q
    |||||||||||||||||||||||||||||||||    
T  27635170 ggtgacactgcaagggaagttcccattcttagt 27635202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 27635201 - 27635260
Alignment:
Q  174 gttcttaagtgttagatatcagagcacaagagtgtatgatgcagatatgggttctccaca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27635201 gttcttaagtgttagatatcagagcacaagagtgtatgatgcagatatgggttctccaca 27635260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 6760929 - 6760966
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttattaat 59  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  6760929 gcgggagctttagtgcaccgggttgccctttttttaat 6760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 39461024 - 39460991
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttat 55  Q
    |||||||||||||||||||||||| |||||||||    
T  39461024 gcgggagctttagtgcaccgggttgcccttttat 39460991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 12625995 - 12626027
Alignment:
Q  22 gcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||||||||||||||||||||| ||||||||    
T  12625995 gcgggagctttagtgcaccgggttgccctttta 12626027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 2541049 - 2541019
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttt 52  Q
    |||||||||||||||||||||||||||||||    
T  2541049 gcgggagctttagtgcaccgggtttcccttt 2541019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 16880677 - 16880647
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttt 52  Q
    |||||||||||||||||||||||||||||||    
T  16880677 gcgggagctttagtgcaccgggtttcccttt 16880647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 32354223 - 32354264
Alignment:
Q  13 cctgtgaaagcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||| | |||||||||||||||||||||||| ||||||||    
T  32354223 cctgtgtatgcgggagctttagtgcaccgggttgccctttta 32354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 16957419 - 16957451
Alignment:
Q  22 gcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||||||||||||||||||||| ||||||||    
T  16957419 gcgggagctttagtgcaccgggttgccctttta 16957451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 38879688 - 38879720
Alignment:
Q  22 gcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||||||||||||||||||||| ||||||||    
T  38879688 gcgggagctttagtgcaccgggttgccctttta 38879720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 41014423 - 41014455
Alignment:
Q  22 gcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||||||||||||||||||||| ||||||||    
T  41014423 gcgggagctttagtgcaccgggttgccctttta 41014455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 14987086 - 14987116
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttt 52  Q
    |||||||||||||||||||||||||||||||    
T  14987086 gcgggagctttagtgcaccgggtttcccttt 14987116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 10484646 - 10484613
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttat 55  Q
    |||||||||||||||||||||||| |||||||||    
T  10484646 gcgggagctttagtgcaccgggttgcccttttat 10484613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 13628820 - 13628787
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttat 55  Q
    |||||||||||||||||||||||| |||||||||    
T  13628820 gcgggagctttagtgcaccgggttgcccttttat 13628787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 54032601 - 54032569
Alignment:
Q  22 gcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||||||||||||||||||||| ||||||||    
T  54032601 gcgggagctttagtgcaccgggttgccctttta 54032569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 10668355 - 10668389
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttatt 56  Q
    |||||||||||||||||||||||| ||||||||||    
T  10668355 gcgggagctttagtgcaccgggttgcccttttatt 10668389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 20004120 - 20004086
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttatt 56  Q
    |||||||||||||||||||||||| ||||||||||    
T  20004120 gcgggagctttagtgcaccgggttgcccttttatt 20004086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 9939592 - 9939624
Alignment:
Q  22 gcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||||||||||||||||||||| ||||||||    
T  9939592 gcgggagctttagtgcaccgggttaccctttta 9939624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 14617166 - 14617198
Alignment:
Q  22 gcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||||||||||||||||||||| ||||||||    
T  14617166 gcgggagctttagtgcaccgggttaccctttta 14617198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 10546268 - 10546305
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttattaat 59  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  10546268 gcgggagctttagtgcaccgggttgccctttttttaat 10546305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 22371217 - 22371250
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttat 55  Q
    |||||||||||||||||||||||| |||||||||    
T  22371217 gcgggagctttagtgcaccgggttgcccttttat 22371250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 9671284 - 9671316
Alignment:
Q  22 gcgggagctttagtgcaccgggtttccctttta 54  Q
    |||||||||||||||||||||||| ||||||||    
T  9671284 gcgggagctttagtgcaccgggttgccctttta 9671316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 36871596 - 36871632
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttattaa 58  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  36871596 gcgggagctttagtgcaccgggttgccctttttttaa 36871632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 6808491 - 6808531
Alignment:
Q  13 cctgtgaaagcgggagctttagtgcaccgggtttccctttt 53  Q
    |||||| | |||||||||||||||||||||||| |||||||    
T  6808491 cctgtgtatgcgggagctttagtgcaccgggttgccctttt 6808531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 20639688 - 20639652
Alignment:
Q  22 gcgggagctttagtgcaccgggtttcccttttattaa 58  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  20639688 gcgggagctttagtgcaccgggttgccctttttttaa 20639652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University