View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12301_high_1 (Length: 485)
Name: NF12301_high_1
Description: NF12301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12301_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 4218583 - 4218318
Alignment:
| Q |
22 |
gacatgaccccaagattagactcaacatagacaggggaccaaccaaggttgctctggtgtatctcttgaccttctaggccaagcatctttgggatgcttg |
121 |
Q |
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| T |
4218583 |
gacatgaccccaagattagactcaacatagacaggggaccaaccaaggttgctctggtgtatctcttgaccttctaggccaagcatctttgggatgcttg |
4218484 |
T |
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| Q |
122 |
gaccacaaatatcaatgtccagaagaccaacttgaaaatcccttgcagctaacgcaaatgccagctgggcagaaaatgtgctcttgccaacacctccctt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4218483 |
gaccacaaatatcaatgtccagaagaccaacttgaaaatcccttgcagctaacgcaaatgccagctgggcagaaaatgtgctcttgccaacacctccctt |
4218384 |
T |
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| Q |
222 |
tcctgacaagaccagtatcttatgtttcacagtggccattctttcggcaatggcaaccatatctgc |
287 |
Q |
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| T |
4218383 |
tcctgacaagaccagtatcttatgtttcacagtggccattctttcggcaatggcaaccatatctgc |
4218318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 5938860 - 5939125
Alignment:
| Q |
22 |
gacatgaccccaagattagactcaacatagacaggggaccaaccaaggttgctctggtgtatctcttgaccttctaggccaagcatctttgggatgcttg |
121 |
Q |
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| T |
5938860 |
gacatgaccccaagattagactcaacatagacaggagaccaaccaaggttgctctggtgtatctcttgaccttctaggccaagcatctttgggatgcttg |
5938959 |
T |
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| Q |
122 |
gaccacaaatatcaatgtccagaagaccaacttgaaaatcccttgcagctaacgcaaatgccagctgggcagaaaatgtgctcttgccaacacctccctt |
221 |
Q |
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| T |
5938960 |
gaccacaaatatcaatgtccagaagaccaacttgaaaatcccttgcagctaacgcaaatgccagctgggcagaaaatgtgctcttgccaacacctccctt |
5939059 |
T |
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| Q |
222 |
tcctgacaagaccagtatcttatgtttcacagtggccattctttcggcaatggcaaccatatctgc |
287 |
Q |
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| T |
5939060 |
tcctgacaagaccagtatcttatgtttcacagtggccattctttcagcaatggcaaccatatctgc |
5939125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 326 - 469
Target Start/End: Complemental strand, 4218027 - 4217877
Alignment:
| Q |
326 |
cttaatcattcttcaaactattattggagagaatgcattatataaatcaagtctagctaatccacagtgaaagcatgatagaagaccactaaatagtgaa |
425 |
Q |
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| T |
4218027 |
cttaatcattcttcaaactattattggagagaatgcattatataaatcaagtctagctaatccacagtgaaagcatgatagaagaccactaaatagtgaa |
4217928 |
T |
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| Q |
426 |
atgtttaatttagaag-------gagctaatattataaatgatcaagcaca |
469 |
Q |
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| T |
4217927 |
atgtttaatttagaaggaaaaaagagctaatattataaatgatcaagcaca |
4217877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 469
Target Start/End: Original strand, 5939414 - 5939573
Alignment:
| Q |
330 |
atcattcttcaaactattattggagagaatgcattatataaatcaagtctagctaatcc-----------acagtgaaagcatgatag-aagaccactaa |
417 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
5939414 |
atcattcttcaaactattatcggagagaatgcattatataaatcaagtctagctaatcctacaagcatgtccagtgaaagcatgatagaaagaccactaa |
5939513 |
T |
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| Q |
418 |
atagtgaaatg-tttaatttagaagg-------agctaatattataaatgatcaagcaca |
469 |
Q |
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| T |
5939514 |
acagtgaaatgtttttttttagaaggcaaaacaagctaatattataaatgatcaagcaca |
5939573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 37362674 - 37362721
Alignment:
| Q |
327 |
ttaatcattcttcaaactattattggagagaatgcattatataaatca |
374 |
Q |
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|||||||| |||||||||||||| |||| ||||||||||||||||||| |
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| T |
37362674 |
ttaatcatccttcaaactattatgggagtgaatgcattatataaatca |
37362721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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